Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00922 ATGACAATCATCATAGGAAAGATATTGCTAACACTATTATTGTTATCATCAATTTTCTCAACAGCCACTTCATCAAAAAGAAGATCAAGATCTTCACACAACAACATAGATTATTGGTGTAACCAAACTCCTCACCCAGAACCATGCAAACACTACATAAAACAAACCCATTACtatcacaaaaaaatcaaacacaaatcaaaattCCGCGAAATTCTTATCCATTTATCATTGGAAAGAGCCGTTATAATGCGAAACATCGCACGTGAATTCGGACAAAACAATTGGCTCaccaacaagaagaaaaaatccGTGTCACATGATTGTTTAAAACTCTACGATAACACAGTTTTCCATCTCAACCGTACATTTTCAGACCTACATGTCAAAAAAAGATGTTCGTCATTTGATGCACAAACATGGCTTAGCACTGCTTATACGAACatccaaacatgtcaaaatggCGCATTGGAATTAAACATTCCAAAATTCATCGTACCAATTATGAAGGTAAACATGACGGAGATTATAAGCAATGGTTTATTCGTCAATTGGGAATTCGTTAAACGCGATGGCCTTGTTCACTACACTGATGATGTTACCGAAGAGGCATTTCCTAGATGGTTTTCGGTTCGAGAGAGGAAACTATTGGAATCTTCTAGAGTTATTAAAGCTCATCTTGTTGTCGCGAAAGATGGTTCTGGACATTTTAAGAGAGTTCAAGATGCTATAAATGCAGCCGGAAGGCGAAAGTTTAAGACAAGATTTGTTATTCGTGTGAAGAGAGGTGTTTATAGAGAGAATATTGAAGTTGGGAAGATGAATGATAATATTATGTTGGTTGGAGATGGGAGTAGGACTACGATTATAACAAGTAATAGAAATGTTCAAGCTGGTTTTACTACCTATAGTTCTGCAACTGCAGGAATTGATGGCCTTCACTTCATTGCACGTGACATTACTTTTGAAAATACGGCGGGACCACGTCGGGGTCAAGCAGTGGCACTTCGATCGGCCTCTGACCTTTCTGTCTTCTACCGTTGTGCTTTCAAAGGCTATCAAGACACTCTCATGGTTCACGCACAACGTCAATTTTACAAAGAATGTTACATCTATGGTACCGTTGACTTCATCTTCGGCAATGCAGCAGTAGTTTTCCAAAATTGCATAATTCTTGTAAGAAGACCATTAAGCGGCCAAGCAAACATGATCACGGCACAAGGTCGAGATGACCCGTTTCAAAACACTGGAATATCGATTCACAATTCTCATATTAGGGCCGCTCCCGACTTTAGGCCCGTTGTTGCGAAATTCAATACCTTTATGGGCAGACCTTGGCAAAGATACTCTAGAGTTGTGGTCATGAAATCGTTCATTGATAATTTGGTAAGCCCAATGGGTTGGTCTCCATGGGGAGGTACAAATTTTGCTCAAAGCACTCTATTTTATGGAGAGTATAAGAACTTTGGGCCGGGCTCATCAACCAGAAATAGAGTGAGATGGCCCGGTTATCATGTAATGAGCAGCCCAGCCCAAGCATCACAATTCACTGTTGCTAATCTCCTTGCTGGTGCCACGTGGTTACCATCCACTGGTGTACCATTCACTTCTGGCCTTTAA 1620 0.3889 MTIIIGKILLTLLLLSSIFSTATSSKRRSRSSHNNIDYWCNQTPHPEPCKHYIKQTHYYHKKIKHKSKFREILIHLSLERAVIMRNIAREFGQNNWLTNKKKKSVSHDCLKLYDNTVFHLNRTFSDLHVKKRCSSFDAQTWLSTAYTNIQTCQNGALELNIPKFIVPIMKVNMTEIISNGLFVNWEFVKRDGLVHYTDDVTEEAFPRWFSVRERKLLESSRVIKAHLVVAKDGSGHFKRVQDAINAAGRRKFKTRFVIRVKRGVYRENIEVGKMNDNIMLVGDGSRTTIITSNRNVQAGFTTYSSATAGIDGLHFIARDITFENTAGPRRGQAVALRSASDLSVFYRCAFKGYQDTLMVHAQRQFYKECYIYGTVDFIFGNAAVVFQNCIILVRRPLSGQANMITAQGRDDPFQNTGISIHNSHIRAAPDFRPVVAKFNTFMGRPWQRYSRVVVMKSFIDNLVSPMGWSPWGGTNFAQSTLFYGEYKNFGPGSSTRNRVRWPGYHVMSSPAQASQFTVANLLAGATWLPSTGVPFTSGL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00922 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 185 IPR035513 -
Tsu06g00922 539 PANTHER PECTINESTERASE 5 538 - -
Tsu06g00922 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 179 IPR006501 GO:0004857
Tsu06g00922 539 CDD PMEI-like_3 39 184 - -
Tsu06g00922 539 Gene3D - 220 539 IPR012334 -
Tsu06g00922 539 PANTHER PECTINESTERASE 5 538 - -
Tsu06g00922 539 SMART PMEI_2 31 183 IPR006501 GO:0004857
Tsu06g00922 539 SUPERFAMILY Pectin lyase-like 222 538 IPR011050 -
Tsu06g00922 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 183 IPR035513 -
Tsu06g00922 539 Pfam Pectinesterase 227 524 IPR000070 GO:0030599|GO:0042545
Tsu06g00922 539 Pfam Plant invertase/pectin methylesterase inhibitor 35 179 IPR006501 GO:0004857
Tsu06g00922 539 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00922 Tsu-Chr6 8281349 8283535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00922 22 539 Carbohydrate Esterase AT3G47400 56.144 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00922 K01051 - gmx:100807908 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00922 06 8281349 8283535 Tsu06g00922 06 8281349 8283535 ECH