Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00898 ATGGTTGTCAACGAAAGACCAACTAAGAGAATGAAAAGAAGAGTCACTGCCGATCTTTATAATTTTCTCACTTTCCCTTCCGCTGGCAACAAATCCGACGCTGTTCCTTTCCGTACCGCTGTTCATCGGTTTGTATCTGAACATGCTCGTGTTACTTTTCCTCCTTCTCTTTTTTCGTCTCTGATGACGTGGCAGATCCTGTTTCGTGTTGGAGATGTTGGTGATGGTTCTGATCTTTCGACTGCTATGGTTGCTCTTGACATTGTTGAAGAGGATGTTACTCGGTCTCGTAGTTCGGTTTATTGTGACCAGTGCCGAGTTGTTGGTTGGAGTGCTCACCCTGTATGTCGAAAGCGATATCACTTCATAATAAGGTCTGCAAGTGATTCTATCGAAGCATACCAAAGACCTTGTTCAAAATGTGAAACTCCTGTCCCATTATCTGAAGCAAGGTGTAAGGCGTGCAATTTTGACATCTCTATTGATGATCTTGAGGATTGTGTGTATCATCAAATGGAAGAGAACACTCATCTTCTGCATGGAGTTATCCACTCCAATGGTTATGGTCACTTGCTTACTCTTAATGGAAGAGAAGGTGGCTCGATGCTTCTTTCTGGATCTGATATTATGGGATTCTGGGATAGGCTATGTGCTGCAATTTCTGTTAGGTTTGAATCCTTCAACTTACTCACATTTTGCTTCAGATTCTGGTTTACCCTTTTAGTTAATTGTGCTATATATTTGTATAGGAAGGTTAGTGTGATGGATTTGTCAAAGAAATTTGGTCTGGATTATCGTTTGCTTCATTCAATTGCAAAAGGGCATTCATGGTATGGCAATTGGGGTTATGAATTTGGGACTGGCAGCTATGCTCTTACCAAAGATGCTTACAATAAGGCAGTTGATAGCTTGTCCAATATGCCCTTGTCCTCGTTTTTATTCCAGGACCGAGGACCTCGACACCATGTGCAATCCGTTATTTCTCTTTACCAGTCGTTGGCAGGAACTGAACTTCTCACAGTGAAAGACCTCTTCTCCTTTTTGTTGGAATTGGTTCATAAATTTCGTAAGCCCAGGAGTGCCAAGACTGCTAAACAGCATGGATATGCCAGTCCCTGTAATTTATTATGTGCATGGACTAGAAAAGATGTCGAAAATGTGCAACAGGCCTTGATCAAGGTATTGCTTGTATCAGGTGCTTGTAATGATGCCAAATGGGTGACAAGCCAAACTCTCAAGGGGGCAGTAAGTAGGCTTGGATCTCCAGAGTTAATAGACTACTGTCTTAAGCATTTGCAAGGGAAAATAGCTGGAAATGGATTGGTAGTTTGTTCGCGATGCAATCCTGCATCCAGTGCTATTGAATTCAGATTGGGACATTTGACTAATGGATTTAGCTCAAATTCAAGCTATCCTTCAGAAGAGCAAGTGATTTCTGATTTgacattcatatttaattcaattattcaCCCTGAAAAAATGATCAAATACAGACCTAAGGTTATTCGGAAAACAATGTGTGATTCAGCCAGAAAGCTTCTTGACTGTAAGCAGTTTATGAAGGATTACAAAATTGAACAAGTGACCACAGAACTGCCTTCAGCAATTAAGCTCTGGTGTCATGTGGAGCTTTCTGATCAACCCAAAGAAGACCAACCATCACCACCGCCAGAGCTAATTGTGTTGCCTTTGGATGCTACTGTTGCTGACCTCAAGAATGAAGCCACTAAAGCTTTCCAATTGGTATATGCAATGTACAAAAAGTTTGAAGCTCAAGAACTTTTAGGATTTGGTTCAATCAGCGATTTGCTAACCGTAAAATTCCTTTTCGGAACAAGTGGATCAGTTGAAATTCTAGGAAAAAGCCCAGCCAAACATGGCTTAAGCCGATTCCGAAAGGAGCGTGGAACTGAAGAATGGAAAGTTGATTGCACTTGTGGTGCTAAGGATGATGACGGAGAAAAAATGTTAGCATGTGATACCTGTGGCGTCTGGCAGCATACCAGATGTGCTGGAATTGGTAGTTCTGATGATGGCATGCCTTCCAAGTTTGTATGTATGAAATGTGTTAAGGCTTGTAAATTGAACGTATCCTGCAGAGATGAAAATGCAGCTGCTTGTAatataaatgtgaattttggtgTACAATGA 2151 0.4068 MVVNERPTKRMKRRVTADLYNFLTFPSAGNKSDAVPFRTAVHRFVSEHARVTFPPSLFSSLMTWQILFRVGDVGDGSDLSTAMVALDIVEEDVTRSRSSVYCDQCRVVGWSAHPVCRKRYHFIIRSASDSIEAYQRPCSKCETPVPLSEARCKACNFDISIDDLEDCVYHQMEENTHLLHGVIHSNGYGHLLTLNGREGGSMLLSGSDIMGFWDRLCAAISVRFESFNLLTFCFRFWFTLLVNCAIYLYRKVSVMDLSKKFGLDYRLLHSIAKGHSWYGNWGYEFGTGSYALTKDAYNKAVDSLSNMPLSSFLFQDRGPRHHVQSVISLYQSLAGTELLTVKDLFSFLLELVHKFRKPRSAKTAKQHGYASPCNLLCAWTRKDVENVQQALIKVLLVSGACNDAKWVTSQTLKGAVSRLGSPELIDYCLKHLQGKIAGNGLVVCSRCNPASSAIEFRLGHLTNGFSSNSSYPSEEQVISDLTFIFNSIIHPEKMIKYRPKVIRKTMCDSARKLLDCKQFMKDYKIEQVTTELPSAIKLWCHVELSDQPKEDQPSPPPELIVLPLDATVADLKNEATKAFQLVYAMYKKFEAQELLGFGSISDLLTVKFLFGTSGSVEILGKSPAKHGLSRFRKERGTEEWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIGSSDDGMPSKFVCMKCVKACKLNVSCRDENAAACNINVNFGVQ 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00898 716 CDD PHD_MMD1_like 643 689 - -
Tsu06g00898 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 694 IPR013083 -
Tsu06g00898 716 SUPERFAMILY FYVE/PHD zinc finger 637 693 IPR011011 -
Tsu06g00898 716 SMART PHD_3 643 690 IPR001965 -
Tsu06g00898 716 PANTHER PHD FINGER PLANT-LIKE PROTEIN 236 703 - -
Tsu06g00898 716 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 224 - -
Tsu06g00898 716 Pfam PHD-finger 644 690 IPR019787 -
Tsu06g00898 716 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 236 703 - -
Tsu06g00898 716 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 224 - -
Tsu06g00898 716 ProSitePatterns Zinc finger PHD-type signature. 644 689 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00898 Tsu-Chr6 8053987 8057256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00898 84 689 PHD Transcription Factor Family AT5G22260 28.213 3.57e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu06g00898 PHD 1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00898 - - mtr:MTR_4g035550 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00898 06 8053987 8057256 Tsu06g00898 06 8053987 8057256 ECH