Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00888 ATGTCCATCACAAAGGAATCTCAATCTCATGCTCAAGTTCAATCTCAATCTCAAGCAGAATCTCAACCCGGCTCAACAACAAAACGCGGCTCCAAGAAACGTAATTCCGTATTCCATGGAGTGCGGAAACGTACGTGGGGACGCTATGTTTCTGAAATAAGGCTACCGGGTCAAAAAACTCGAATATGGCTAGGATCATTCGAGTCGGCTGAAATGGCTGCTCGTGCATATGACTCGGcggcttattttttaaaaggtaGTTCGGCTACTCTTAATTTTCCCGAAGAAATTGAATTTCTACCACGCCCTATTTCTTCGGCTAGAAGAGATATTCAATTGGCGGCGGCTAAAGCAGCTCATCAACCAAGTGGAAGCCGCCGCCAACAAGAAGATGTACTTACAATTACACAATCTTCTTCCaatgaaacaaaaatgaatgaaaatggtaataatatcaataatgctaataatattgatattgatcATCATGATGTTGATGATCTTTCCATTGAAATGATGGAGTGGtggaaagaagaagaatatgCCACTACGACGTCGTTTTGGGATGTGAAAGATGCTCCTTTGATGAGTCCAACAAGGGTGGGGCCCACTTTTGGAGATATGATGACATGGAATGAAGTGTTCAATTTCAATGATGATATTCTAGCGATGGTGCAATGA 681 0.3774 MSITKESQSHAQVQSQSQAESQPGSTTKRGSKKRNSVFHGVRKRTWGRYVSEIRLPGQKTRIWLGSFESAEMAARAYDSAAYFLKGSSATLNFPEEIEFLPRPISSARRDIQLAAAKAAHQPSGSRRQQEDVLTITQSSSNETKMNENGNNINNANNIDIDHHDVDDLSIEMMEWWKEEEYATTTSFWDVKDAPLMSPTRVGPTFGDMMTWNEVFNFNDDILAMVQ 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00888 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 158 - -
Tsu06g00888 226 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Tsu06g00888 226 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Tsu06g00888 226 MobiDBLite consensus disorder prediction 1 31 - -
Tsu06g00888 226 CDD AP2 36 95 IPR001471 GO:0003700|GO:0006355
Tsu06g00888 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 7 158 - -
Tsu06g00888 226 MobiDBLite consensus disorder prediction 1 38 - -
Tsu06g00888 226 SUPERFAMILY DNA-binding domain 36 95 IPR016177 GO:0003677
Tsu06g00888 226 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Tsu06g00888 226 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Tsu06g00888 226 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Tsu06g00888 226 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00888 Tsu-Chr6 7973551 7974426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00888 31 112 AP2-EREBP Transcription Factor Family AT1G01250 65.854 7.21e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g00888 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00888 K09286 - gmx:100783790 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00888 06 7973551 7974426 Tsu06g00888 06 7973551 7974426 ECH