Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00885 ATGACTCCAGTTAATTTGGCAGGACAATTTGGTGACACAACATACACCAAAGTTTTTGTTGGAGGGTTAGCTTGGGAAACTCAAAAGGAAACtatgaagaaatattttgaacaatttgGTGAGATCTTGGAAGCTGTTGTTATCACTGACAAAGCCACTGGAAGATCCAAAGGCTATGGTTTTGTTACTTTTCGTGAGCCTGATGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCAATAATTGATGGTAGAAGAGCTAATTGCAATCTTGCTTCTTTGGGTGTCCAAAGATCTAAACCTTCAACACCAAAGCATGGAGGAGGAGGAAGGAACTTTAGGGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGTGGGATCAGCTTTTCCTTCAGCTGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTTCTTACTCACCGGATTACAGTTACCCTACGAGCTACTATGGTATGTACGGTGGAGCAGCAGCACAGTACCCTGTTTATGGAAATGGACCAGCTGGAGGAATGATGACTGGTGGTGCAGCAGCTGCTGCAGCATACTATCCATATCTTCAGTATGGTGAAGGAACCGGCGGTGCAACAACCGGCGGCTATACTTCCGGTCAAGGTTATGGTGTTAACTACCCACCACAAGTGTTTCAGTATTCTCCAATTGCTTCAACTGGTGGTTATGCTCAGCATTATGGAACACCCATTTCTCTTGCACCTTCTCCTGCTGCCTTGCCATCAGTGTGTTTTGCTGTGCCACAGGCGTAA 807 0.4461 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGVGSAFPSAATFPHYAIQQGIPYNVYGYSSYSPDYSYPTSYYGMYGGAAAQYPVYGNGPAGGMMTGGAAAAAAYYPYLQYGEGTGGATTGGYTSGQGYGVNYPPQVFQYSPIASTGGYAQHYGTPISLAPSPAALPSVCFAVPQA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00885 268 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Tsu06g00885 268 SMART rrm1_1 17 89 IPR000504 GO:0003723
Tsu06g00885 268 PANTHER OS01G0876800 PROTEIN 1 267 - -
Tsu06g00885 268 PANTHER BOULE-RELATED 1 267 IPR037366 GO:0003729
Tsu06g00885 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Tsu06g00885 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Tsu06g00885 268 CDD RRM_RBM24_RBM38_like 16 91 - -
Tsu06g00885 268 Gene3D - 7 112 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00885 Tsu-Chr6 7920565 7930940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00885 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 1.11e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00885 - - gmx:100779046 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00885 06 7920565 7930940 Tsu06g00885 06 7920565 7930940 ECH