Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00881 ATGGGTTGTTGGAGATTCTCACTCTCTTCAAATTCCACTACTAATATTCCCTTTAAACGAATCTACCATGGTCCCTTTATCAAAGACATTTACGGGGGAAATTCCCATGTATGCGGTCTGATTAAAGAGACCAACGGTTTTCGCCCTGAGTGTTGGCAATGGAAAGGTTTCAATTCAACAAACCCAAAGATGAAGATGAACATGTCAAGTATCGCGGTGGGGGAGAATTTTGCATGTGGGCTATCAGAAAATGAAAAAGGGAATAATGTTACTTGTATAGGAAGTAACAAAAAAGTAGTTGATGAACCAAAGAATGGTAGAGATTATTCTTTAATTGAAGCTGGTTCAAATCATGTTTGTGCTATCACAAATGATGGTAGTTTGGATTGTTGGGGTGATATGGTTGGTGAGAAACCAATAGGAAGATTCATTTCATTGGCTTTAGGAGAGAATAGAAGTTGTGCACTTGGGTATGATGGATTAATCACTTGTTGGGGTTTGAATAATTTCACCTTGCCAATAAGTTTAAAAGGGACTTATTTTGAGTCAATTGTGgctaaaaatagtgttttttgtGGTGTTTTGACTTCTAATTACTCTTTATTTTGTTGGGGTGATGAAATTTTTGAGTCAAAAGAAGATGCATTCAAGGTGTTTGATAATGTGCTTCCTGGACCTTGTAAGAATCAATGTCCATGTGGACCTTTACCAGATTCTGCTAAACTTTGTGTCTCACCAAGCATCATTTGTAAAGCTTGTTTACCATCGTTTGAAATTCCATCATCACCACCGTTGAATCCTCCGTTAGGAAGTCCCGGAAATTCATCGAAAAGTGGTACTTGGAGCAACAAAATGGTGGCGTTTCTAGTAATCGGATGTGTTGGTTGTAGTATTTTGTTACTAGCCTTAtctttcttcttttacaaatacTGCAGAGGCACAATATGCAGATCTAAATCAAGAGTTCATGACTCTGGAAGATTAGACGATCTTGATCAAGAAACCGAATTGGAGCCTCGAGCTAACCGTGCAGTTCTCGAGAAGAGGTTAAGCCATGTAATCAGCAAGGGAAATGGAGGTAGCCTTTTGGAGGAATTTTCACTTCAAACACTAATTGAAGCCACTGGAAATTTCTCCGAAGAGAACAAAATCGGTGTTGGAAGCTTCGGTTCCGTGTACCATGCTAAACTTGAAGACGGAAAAGAAGTTGCTATCAAAAGAGCCGAAATGTCAACAAATTCACCTTCATTTGGAAATGTTAGTGTCACCAAAAGACAAGAAGACAATGACAGTGCTTTTGTTAATGAACTTGAATCTTTATCAAGACTCCACCACAAAAACTTGGTAAAATTACTCGGTTTCTACGAAGACAAAAACGAGAGAATCCTAGTATACGAATACATGAACAACGGAAGCTTAAACGATCATCTTCATAAGTTTCAAACTTCAACTATTATGTCATGGAGCGGTCGTATAAAAGTTGCATTAGACGCAGCTAGAGGCATAGAATATTTACATAAATACGCCATGCCACCAATTATTCACCGTGACATTAAAACATCAAACATTTTATTAGATTCAAAATGTGTCGCTAAAGTAGCCGATTTCGGCTTATCCCTAATGGGTCCAGAAGACGAAGAGTCACATATTTCGCTTCTAGCAGCCGGAACCGTTGGTTACATGGATCCAGAATACTATAGGCTACAACACTTGACTACAAAAAGTGACGTGTATAGTTTCGGCGTTGTTTTGTTAGAACTTTTAAGTGGGTATAAAGCTatacataaaaatgaaaatggagTGCCAAGAAATGTGGTTGATTTTGTTGTACCATTTATTGTTCAAGATGAGATTCATAGAATTTTGGATCCAAAATTGCCACCACCAACACCATTTGAGATTGAAGGTGTGGCTTTTGTAGGTTATTTAGCTTGTCATTGTGTTCGTTTAGAAGGTAGAGATAGACCAAGTATGAGTCATGTTGTGAATAGTTTAGAGAAAGCACTAGAGGCTTGTTTGGCACAACCAATAATTTGTGGGTCCAATAGGACCACTACTAGCACTATTTCTAATGAGTGA 2079 0.3728 MGCWRFSLSSNSTTNIPFKRIYHGPFIKDIYGGNSHVCGLIKETNGFRPECWQWKGFNSTNPKMKMNMSSIAVGENFACGLSENEKGNNVTCIGSNKKVVDEPKNGRDYSLIEAGSNHVCAITNDGSLDCWGDMVGEKPIGRFISLALGENRSCALGYDGLITCWGLNNFTLPISLKGTYFESIVAKNSVFCGVLTSNYSLFCWGDEIFESKEDAFKVFDNVLPGPCKNQCPCGPLPDSAKLCVSPSIICKACLPSFEIPSSPPLNPPLGSPGNSSKSGTWSNKMVAFLVIGCVGCSILLLALSFFFYKYCRGTICRSKSRVHDSGRLDDLDQETELEPRANRAVLEKRLSHVISKGNGGSLLEEFSLQTLIEATGNFSEENKIGVGSFGSVYHAKLEDGKEVAIKRAEMSTNSPSFGNVSVTKRQEDNDSAFVNELESLSRLHHKNLVKLLGFYEDKNERILVYEYMNNGSLNDHLHKFQTSTIMSWSGRIKVALDAARGIEYLHKYAMPPIIHRDIKTSNILLDSKCVAKVADFGLSLMGPEDEESHISLLAAGTVGYMDPEYYRLQHLTTKSDVYSFGVVLLELLSGYKAIHKNENGVPRNVVDFVVPFIVQDEIHRILDPKLPPPTPFEIEGVAFVGYLACHCVRLEGRDRPSMSHVVNSLEKALEACLAQPIICGSNRTTTSTISNE 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00881 692 SUPERFAMILY RCC1/BLIP-II 18 208 IPR009091 -
Tsu06g00881 692 SMART serkin_6 378 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00881 692 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 13 678 IPR044815 GO:0004674
Tsu06g00881 692 SUPERFAMILY Protein kinase-like (PK-like) 361 665 IPR011009 -
Tsu06g00881 692 Gene3D Transferase(Phosphotransferase) domain 1 468 676 - -
Tsu06g00881 692 PANTHER OJ000114_01.11 PROTEIN 13 678 - -
Tsu06g00881 692 Gene3D Phosphorylase Kinase; domain 1 342 467 - -
Tsu06g00881 692 Pfam Regulator of chromosome condensation (RCC1) repeat 112 133 - -
Tsu06g00881 692 ProSiteProfiles Protein kinase domain profile. 378 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00881 692 Gene3D - 135 217 IPR009091 -
Tsu06g00881 692 Gene3D - 5 134 IPR009091 -
Tsu06g00881 692 Pfam Protein kinase domain 379 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00881 692 CDD STKc_IRAK 384 667 - -
Tsu06g00881 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Tsu06g00881 692 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00881 Tsu-Chr6 7892917 7895367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00881 3 686 Receptor kinase-like Gene Family AT5G47850 50.865 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Tsu06g00881 Pkinase 9.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00881 - - pvu:PHAVU_011G003100g 891.338