Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00880 ATGATTTCTGATCCACATGCATTCGATTGTTGCATTTGCTTTCAATCTTTAACCATTCCCGTCTTTCAGTGTGTTAATGGTCATATTGTTTGCTCAACCTGCTATAGTACACTTCAACAAAAGTGTCTCAAATGCTCAAATTGCTTAATACGTTGTAGAGCCTTTGAGAATCTATTGAAATCTATCCAAATGTTTTGCCCAAACGAAAAATATGGCTGCAAAGAGAAGATAAGTTACATTAAATATAGGGAGCATGTAGAAGAATGCATTCATGTGCCATGTTACTGCCCCCTTTCAAGTTGTAACTTTGTTGGCTCATCGGAAGTGTTGTCCAACCATTTCAACCACCAACACGAGGATTCTCGAATCAAATTTTCTTATGGCCACTCCTTCATTGTCTCCTTCAAGTCTAATGATGAAACAATTGTGCTTCAAGCGGAAACTGATTGCAAACTATTTCTTCTCAATATTAGACTTGTGAGGCTAGGAAATGCAGTCAATATTAGCTGCATTGGTCCTCACTATTCTGATCAACACTATCATTGTGATATTTTGGTTAGGACCCAAATATGCACTTTAAAGTTACTGTCTTTTCTGAAGAATGTTCAACGGGTTTCTTTAGCAACTCTTTCATCAAACTTTCTATTGATTCCATTTGATCATTTTGGTTCTTCTGAATTTTTAGAGCTAGAAATTTGCATAACCCCGAAGGTTTTTAGGCTATTGTTGAACCATCATTCTTGGCTTACGGAGTTGCCTTGGATTCAAATGGGCCGAGCGCTTTTGATTCGAGTTCAGGAGTTAGAATCTAGTGGTATCTTTGTAGGTAGAGTTGATGTCTTCTTAGGTTCTTTGGAGGATTAA 864 0.3738 MISDPHAFDCCICFQSLTIPVFQCVNGHIVCSTCYSTLQQKCLKCSNCLIRCRAFENLLKSIQMFCPNEKYGCKEKISYIKYREHVEECIHVPCYCPLSSCNFVGSSEVLSNHFNHQHEDSRIKFSYGHSFIVSFKSNDETIVLQAETDCKLFLLNIRLVRLGNAVNISCIGPHYSDQHYHCDILVRTQICTLKLLSFLKNVQRVSLATLSSNFLLIPFDHFGSSEFLELEICITPKVFRLLLNHHSWLTELPWIQMGRALLIRVQELESSGIFVGRVDVFLGSLED 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00880 287 Pfam Seven in absentia protein family 50 141 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tsu06g00880 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 1 237 IPR044286 -
Tsu06g00880 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 114 IPR013083 -
Tsu06g00880 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 1 237 - -
Tsu06g00880 287 ProSiteProfiles Zinc finger SIAH-type profile. 61 119 IPR013010 GO:0008270
Tsu06g00880 287 SUPERFAMILY TRAF domain-like 61 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00880 Tsu-Chr6 7874887 7876081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00880 8 134 C3H Transcription Factor Family AT2G41980 28.788 6.59e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00880 K04506 - mnt:21409755 214.157