Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00876 ATGGCCCAACAGTCATCCAGGCTTCAGCGCTTGCTTACCCTCTTGGACACTGGCTCAACCCAAGCAACAAGGTTGACTGCAGCTCGGCAGATAGGGGAGATTGCAAAATCGCACCCTCAAGACTTGACCAGTCTTCTTAagaagGTTTCTCAATATCTGCGCAGTAAAAAATGGGATACAAGAGTTGCTGCTGCCCATGCAATTGGCTCTATTGCTGAGAATGTTAAGCACATAAGCTTAAATGAACTTATTGGTTCTGTTGTAACAAAAATGTCTGAGAGTGGGATATCTTGTAGCGTTGATGATCTGTGTGCATGGCCTTACTTACAAGCAAAAATTACAGGAAGCTCATTTAGAAGCTTTGATATGAATAAGGTGCTTGAATTTGGAGCTTTGTTAGCATCAGGAGGACAGGAATACGACATCGGAAGTGATAATATAAAGAACCCAAAGGAGCGTTTGGTTCGCCAAAAGCAAAATCTCCGACGCCGTTTAGGTTTGGATGTCTGCGAACAATTTATGGATATCAATGATGTAATAAGAGATGAAGATCTTTTGGCACACAAATCAGACTCGTATCTCAATGGCGCAGATCATAAAGTTTTTACATCTTGTTCTGTACATAACATCCAGAAAATGGTTGCAAATATGGTTCCCAATGTCAAATCAAAGTGGCCGCCGAGTGCTAGAGAACGAAATCTTTTAAAACGCAAAGCAAAAAATAACTCAAAGGACCAAACGAAGAGCTGGTGTGAAGATGGAACAGAGGCTGCAGGCACTCAAAATTTGACTTCAAAAGGCACATGTCCCGATTCCGTAAATTCTAGCAAGCCATTCACACAAGTTAATCACGATGAAGATGGATTTGAGCACGAGGAAGATGGACAATGGCCTTTCAGTACTTTTGTTGAGCAACTTATTATTGATATGTTCGATCCTGTTTGGGAGGTACGGCATGGTAGCGTGATGGCATTGAGAGAGATTTTAACACATCAAGGTGCTTCTGCTGGAGTGTTGAAACAGGACCCACACCAGGATAGGACCTCATTTGTGGAATTAGAAgacaaaaatataacaaatacaTTGAAGAGAGAGAGGGATATTGATTTAAATATGCAAGTTTCAGCAGATGAGTGTGTCTCGAACTTGAAGAGGCCAAAACTTGAAGATGTATCGTTGTCAACCTCTATGGATAGCGTGATGACTTGCAGCAACGATGGTGATATTGAAAACAGCATTAGTTCTGAAACACGGGGGTGCAATTTACCTGTGGACTACGGGAATGGGAAATTTAATGGTAGTTCTATAGACATGAATCTGGAAACTTACTCCATCGATTTACATGATGCACACAAGGAACCTGCTAATATCACAGAGCAGAAGGGTTATTCTCATGACAAAATGATCCCCTCTGGAAACCCTAATGTGCTGAGAAATCTTCCTCAGAATTGTGAGCTGGCGCACTTGGTTAAAGTGACTAGAAGTTCCTGGCTTCGGAACTGTGAATTTCTCCATGACTGTGTCATACGCTTTTTGTGTGTATTGTCACTTGACCGcTTCGGAGATTATGTATCTGATCAGGTTGTTGCGCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATGCTGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGTCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGATGCTTTCCGATTTGCTTGGACGTGTTCTTCCTGCATGTAAATCTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCCGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCAGGGTCAAACACTGCATTCAATTGTGATGCTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACTAGCAGTGTAATGAATCTGCTTGCAGAAATCTATTCTCATGAAGAGATGGTCCCAAAGATGTATAAAGTTTTTAAATTGGAAGACAAGGAAATAGAAAATGGAGCTGGTGATTGTGGTGATAATGGAGAAGAAAATCCTTTTGTACTTTCAACTCTGGCACCACGTTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTCCGTTATTCAGCAATACGAACTCTGgaGAGGCTACTCGAAGCTGGTTATAAGAGAAGCATGTCTGAGCTCTCTAGTGCTTCATTTTGGCCCTCATCAATATTTGGAGATACTCTTAGAATTGTCTTTCAAAATTTACTATTGGAAACAAATGATGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTGGAGGACCTGGAGACAGCTGCAAGGTCTTACATGACTTCCTGGATAGAACTTGCCTCTACACCTTTTGGTTCTGCATTAGATCCCTCAAAGATGTTTTGGCCTGTTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCTGTGAGGACTGAAAATGAATATGGCGGAGATCTTGGCCTTGAATCTACGATATCAACTATTCCACATGATAGAAATGGAGATGTTCCTATGAATTCCATTAAGATAGTTGTTGGTGCCGAGGTTGACACATCTGTAACTCGTACCCGGGTAGTTACAGCAACTGCTTTGGGAATTTTCGCCTCTAAGCTTTCAGAGGGttctttaaaaaatacaattgatCCACTGTGGAGTTCATTAACCTCTTTTTCTGGTGTCCAACGACAGgTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAGGACCAGGAATTTGTCTGAAAGCCTCAATGGTATTCCTGCTTCCCTCAAAGGTTGGTTGCTGGACTTATTAGCATGTTCTGACCCTGCATTGCCGACAAAAGGTTCACTTCTTCCTTATGCTGAGCTTTCAAGAACTTATTCTAAGATGCGAAGTGAGGCAGGTCAATTGCTAAATGCAGTCAAATCTTCTGGTATGTTTAGCGAGTTATTGACAACAACCAATATTGAGTTGGAAAACTTGAGTGTAGATGATGCCATTGGTTTTGCATCAAAAATTCCAGCATTGTGTAATGATAGTTCTGCAAATGAATCTTTGAGAAAGAACACTATGGATGATATTGAATCCTCAAAACAGAGGCTCTTGACAACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATGTTACGGTTACATCTGCAGTTGCAGCTGCAGTTGTGTGGATGTCTGAGTTTCCTACACGGCTCACCCCCATCATTTTACCTTTGATGGCTTCAATCAAACGCGAGCAGGAGGAAATACTGCAAACTAAGTCCGCTGAGGCTCTCGCTGAACTAATATATCACTGTGTTTCACGTAGACCTTGCCCCAATGATAAATTAATCAAGAATATTTGTAGTTTGACATGCATGGATCCCTCCGAGACCCCACAAGCTAAATTAATTTGTTCTATGGAGAGTATTGATGACCAAGGTCTGCTGTCTTTCAGAACTCCTGTGAATAAACAGAAGTCAAAGGTGCATGTGCTGACTGGTGAGGACCGATCAAAGGCGGAGGGATTTATAAGTAGACGTGGATCTGAGCTAGCACTGAAGCTTCTGTGTGAGAAGTTCGGTATTTTGCTATTTGATAAGGTTCCTAAGCTGTGGGATTGCCTTACTGAGGTTCTTAAGCCAAGCTCCTATGAATCTCTACTTGCTGCTACTGAAAAGCTTGATACTGTTGCAATTGAGTCTGTTAGTGATCCTCAGATCTTGATTAACAATATCCAGGTCGTGCGATCTGTTGCTCCCTTGTTAAATGAGGAGTTGAAGCCAAAACTTTTGACACTTCTCCCATCTGTTTTTAAATGTGTTAAGCACTCTCATGTCGCAGTTAGACTAGCTGCTTCACGCTGTATCACTTCCATGGCCCAATCAATGATTGTGAAAGTTATGGGAGCCGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCCTCGTCAGTTCATGCTCGGCAAGGAGCAGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTTGGTGTAGAATTGGTTCCTTATGCTCCTCTGTTGGTTGTTCCCCTTCTACGATGCATGAGTGATTCTGATCAGTCTGTTAGACAGAGTGTGACTCATAGCTTTGCTGCTCTTGTACCTTTACTTCCTTTAGCACGCGGTGTTCCACAACCAACTGGATTAGGGGAAGGTATATCTAGAAATGCAGAAGATTTACATTTTCTGGAGCAACTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTATCAACAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAACTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGAAATAGTTGAGCGTCAAACTCAAATCGGCAATGAGGATCTTCTTCCATCTTTAATTATTTGCCCATCGACACTAGTTGGGCACTGGGCTTTTGAGATAGAAAAGTATATCGATGTTTCAGTCATATCTAGTCTTCAGTATGCTGGTTCTGTTCAGGATAGAATGCTTCTTCGAGATAGTTTTTGCAAACATAATGTTATTATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTGGGACAGCTGCTGTGGAATTACTGCATTTTAGATGAAggacatataataaaaaatgccAAGTCTAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCAATACAGAATAATATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACAGATAGACAGTTCCAAGGCACATATGGGAAACCACTTTTAGCTGCAAGAGATCCAAAGTGCTCTGCTAAGGATGCTGAAGCTGGAGCACTTGCTATGGAAGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGGAGGACAAAGGATGAAGTCTTGTCAGATCTGCCGGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCTCTGTGCAGCTTAAACTTTACGAACAGTTTTCTGGGTCTCGTGCGAAACAAGAGATGTCATCTATTGTAACAACGAATGAGTCAGCTGCAGCAGAAGGAAGTAGCAGTTCTACTAAAGCGTCGTCACATGTTTTCCAGGCACTCCAATACTTGCTAAAACTTTGTAGTCATCCATTGCTTGTACTTGGTGGGAAGATTCCAGATTCCCTTTCTGCCATCCTCTCAGAAGTGTTCCCTGATGGCTCCGATATCATTTCCGAACTTCACAAACTCCACCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAATGTGGAATTGGAGTTGACACTTCAGGTTCTGAGGCTGCTGTTGGCTTTGGGCAGCATAGGGTATTAATATTTGCTCAACATAAGGCGTTCTTGGATATAATTGAAAAAGATTTGTTTCAGACACACATGAAAAATGTCACGTATTTGCGGCTGGATGGATCAGTTGAGACCGAGAAGCGATTTGAAATCGTAAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTATTGCTCACGACTCATGTGGGCGGGCTTGGTTTGAACCTAACATCTGCAGATACGCTTGTTTTTGTGGAGCATGACTGGAATCCTATGCGCGATCTTCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTTCACCGTCTGATAATGCGTGGTACATTGGAAGAGAAAGTTATGAGTCTACAACGGTTTAAAGTGTCAGTTGCTAATGCTGTCATTAATGCGGAAAATGCTAGTTTGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAGTTCCCAAGAAGGGCTCTTCTGTTGCAAAGAGTTCAGAGGACAATGCTGATGGAGACGTAGGCACTGGAAAGGGATTGAAAGCAATACTTGGGGGATTGGAGGATCTATGGGATCAATCACAATATACCGAAGAGTACAATTTGAGTCAATTTTTGGCGAAGCTTAATGGTTAA 6141 0.4133 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGEIAKSHPQDLTSLLKKVSQYLRSKKWDTRVAAAHAIGSIAENVKHISLNELIGSVVTKMSESGISCSVDDLCAWPYLQAKITGSSFRSFDMNKVLEFGALLASGGQEYDIGSDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLLAHKSDSYLNGADHKVFTSCSVHNIQKMVANMVPNVKSKWPPSARERNLLKRKAKNNSKDQTKSWCEDGTEAAGTQNLTSKGTCPDSVNSSKPFTQVNHDEDGFEHEEDGQWPFSTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVLKQDPHQDRTSFVELEDKNITNTLKRERDIDLNMQVSADECVSNLKRPKLEDVSLSTSMDSVMTCSNDGDIENSISSETRGCNLPVDYGNGKFNGSSIDMNLETYSIDLHDAHKEPANITEQKGYSHDKMIPSGNPNVLRNLPQNCELAHLVKVTRSSWLRNCEFLHDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHAALVNETLNILLKMQCSPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSHEEMVPKMYKVFKLEDKEIENGAGDCGDNGEENPFVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSSASFWPSSIFGDTLRIVFQNLLLETNDDILQCSERVWSLLVQCSVEDLETAARSYMTSWIELASTPFGSALDPSKMFWPVAFPRKSQFRAAAKMRAVRTENEYGGDLGLESTISTIPHDRNGDVPMNSIKIVVGAEVDTSVTRTRVVTATALGIFASKLSEGSLKNTIDPLWSSLTSFSGVQRQVASMVLISWFKEIRTRNLSESLNGIPASLKGWLLDLLACSDPALPTKGSLLPYAELSRTYSKMRSEAGQLLNAVKSSGMFSELLTTTNIELENLSVDDAIGFASKIPALCNDSSANESLRKNTMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIKREQEEILQTKSAEALAELIYHCVSRRPCPNDKLIKNICSLTCMDPSETPQAKLICSMESIDDQGLLSFRTPVNKQKSKVHVLTGEDRSKAEGFISRRGSELALKLLCEKFGILLFDKVPKLWDCLTEVLKPSSYESLLAATEKLDTVAIESVSDPQILINNIQVVRSVAPLLNEELKPKLLTLLPSVFKCVKHSHVAVRLAASRCITSMAQSMIVKVMGAVVENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDSDQSVRQSVTHSFAALVPLLPLARGVPQPTGLGEGISRNAEDLHFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEIVERQTQIGNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYAGSVQDRMLLRDSFCKHNVIITSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQGTYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSSVQLKLYEQFSGSRAKQEMSSIVTTNESAAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVLGGKIPDSLSAILSEVFPDGSDIISELHKLHHSPKLVALHEILEECGIGVDTSGSEAAVGFGQHRVLIFAQHKAFLDIIEKDLFQTHMKNVTYLRLDGSVETEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLDLFASAEVPKKGSSVAKSSEDNADGDVGTGKGLKAILGGLEDLWDQSQYTEEYNLSQFLAKLNG 2046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00876 2046 Gene3D - 508 696 IPR011989 -
Tsu06g00876 2046 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1465 1635 IPR014001 -
Tsu06g00876 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1432 1685 IPR027417 -
Tsu06g00876 2046 Pfam SNF2-related domain 1471 1767 IPR000330 GO:0005524|GO:0140658
Tsu06g00876 2046 SMART helicmild6 1845 1931 IPR001650 -
Tsu06g00876 2046 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1822 1981 IPR001650 -
Tsu06g00876 2046 Gene3D - 4 94 IPR011989 -
Tsu06g00876 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1686 1986 IPR027417 -
Tsu06g00876 2046 Pfam Domain of unknown function (DUF3535) 782 1236 IPR022707 -
Tsu06g00876 2046 MobiDBLite consensus disorder prediction 236 251 - -
Tsu06g00876 2046 SUPERFAMILY ARM repeat 6 1489 IPR016024 -
Tsu06g00876 2046 Pfam Helicase conserved C-terminal domain 1831 1931 IPR001650 -
Tsu06g00876 2046 Gene3D - 1426 1684 IPR038718 -
Tsu06g00876 2046 Gene3D - 1695 2008 IPR027417 -
Tsu06g00876 2046 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1981 IPR044972 GO:0003677|GO:0016887|GO:0017025
Tsu06g00876 2046 MobiDBLite consensus disorder prediction 253 282 - -
Tsu06g00876 2046 MobiDBLite consensus disorder prediction 236 294 - -
Tsu06g00876 2046 CDD SF2_C_SNF 1800 1942 - -
Tsu06g00876 2046 SMART ultradead3 1449 1643 IPR014001 -
Tsu06g00876 2046 CDD DEXHc_Mot1 1453 1685 IPR044078 GO:0005524
Tsu06g00876 2046 Gene3D - 1098 1410 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00876 Tsu-Chr6 7815653 7838059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00876 1448 1986 RAD5 or RAD16-like Gene Family AT1G02670 27.304 8.63e-42 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu06g00876 DUF3535 3e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00876 K15192 - gmx:100777977 3423.25