Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00861 ATGCAACCTAGTTCCGGTGgtggcggtggtggtggtggcggtGGTTTGACACGGTTTCATTCAACTCCGGTGAATTGGATAGAATCATTTATTCTTAAAGAAGAGGAAGTTGATGAAAGACAACAAGACAATTTAAGTTTTACTCAATTGCTTTCTAATAACGCTGTTGCTGGTTCTTCAAATTCTGATTCTATTTCTCAACCATATTTATCTGATTACTATTACAACTCTTCAACTCATACTCCAACTTCTGCCAATGCTAGTAATAATCCCTTCACACAGGGAGTTGAGGATAGTGCTAATGCACTGGACCTTAAAATGGAGAAGATTTTAGAGGATTCAGTTCCTTGTAAGATTCGGGCTAAGCGTGGTTTTGCTACACATCCAAGAAGTATTGCTGAaaggGTTCGGAGGACTCGTATTAGTGACCGCATAAGAAAACTTCAAGAACTTGTGCCAAACATGGATAAGGTTTTCATCTTCCTTAATTGA 492 0.3577 MQPSSGGGGGGGGGGLTRFHSTPVNWIESFILKEEEVDERQQDNLSFTQLLSNNAVAGSSNSDSISQPYLSDYYYNSSTHTPTSANASNNPFTQGVEDSANALDLKMEKILEDSVPCKIRAKRGFATHPRSIAERVRRTRISDRIRKLQELVPNMDKVFIFLN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00861 163 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 157 IPR036638 GO:0046983
Tsu06g00861 163 Gene3D - 118 160 IPR036638 GO:0046983
Tsu06g00861 163 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 163 IPR011598 GO:0046983
Tsu06g00861 163 PANTHER TRANSCRIPTION FACTOR BHLH117-RELATED 15 157 - -
Tsu06g00861 163 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00861 Tsu-Chr6 7691023 7693629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00861 103 161 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G35460 81.356 4.78e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00861 - - lja:Lj3g3v3754390.1 146.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00861 06 7691023 7693629 Tsu06g00861 06 7691023 7693629 ECH