Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00859 ATGCCAAGTGGAAAGAAAACCCTAGGTCgacagaaaattgaaatgaaaaagaTAAGTAAGGAGAGCGACTTGCATGTCACTTTCTCGAAGCGTCGCAACGGGCTCTTCAAGAAAGCCAGTGAGCTTTTCACTCTTTGTGGTGCATATGTTGCACTATTTGTATTTTCCCCTAGTGGGAGGGCATTTTCTTTTGGTCACCCCGACGTTCATACGATCATAGATCGTTTTCTCTCATGGATCCAACCTCAAATCTTCATTGAGGCTACCCGTAACGCCAATGTACGTGAGCTCAATGCTGGATTGACTCTGATCAATGATGCATTGGACTTCGAGAAGAAGCGCGGTGATGATTTGAGTCACTTGTGCAGTATGACTGAGGATCTGTCTTGGTGGGCTTGTCCCATTGATAGGATGACCCAACCTCAACTTGAATTATTGAAGATTGCATTGGAGGAGCTGAAAAAACATGTTGGTCAACAAACTGATAGACTTGTAATTTTGAATGCTCCTACCGAAACTGAACAAGCTCAAATGTTGTCAACACAATTTTTTCAGAATCCAATGTTGCAATCTCATTTGTTGGGCTTCAATAATATGGAAGGAGGGGAATATGGACCCGAAGATTTGTTGGGCTTCAATAATATGGGAGGAGGGGAATATGGAACCTCGGGATCCTTTTGA 681 0.42 MPSGKKTLGRQKIEMKKISKESDLHVTFSKRRNGLFKKASELFTLCGAYVALFVFSPSGRAFSFGHPDVHTIIDRFLSWIQPQIFIEATRNANVRELNAGLTLINDALDFEKKRGDDLSHLCSMTEDLSWWACPIDRMTQPQLELLKIALEELKKHVGQQTDRLVILNAPTETEQAQMLSTQFFQNPMLQSHLLGFNNMEGGEYGPEDLLGFNNMGGGEYGTSGSF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00859 226 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu06g00859 226 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu06g00859 226 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 181 - -
Tsu06g00859 226 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Tsu06g00859 226 PANTHER MADS BOX PROTEIN 7 181 - -
Tsu06g00859 226 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tsu06g00859 226 Gene3D - 87 182 - -
Tsu06g00859 226 Gene3D - 21 86 IPR036879 GO:0003677|GO:0046983
Tsu06g00859 226 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu06g00859 226 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu06g00859 226 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu06g00859 226 Coils Coil 143 163 - -
Tsu06g00859 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00859 Tsu-Chr6 7682775 7683455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00859 5 171 Type I MADS-box Gene Family AT5G60440 48.000 2.97e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu06g00859 SRF-TF 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00859 - - mtr:MTR_1g106070 201.445