Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00858 ATGTCAAGTGGAAAGAAAACACAAGGTCGGAAAAAAATTGagatcaaaaaaataaacaaggagagCGACCTGAATGTAACTTTTTCGAAGCGCCGTAGCGGGCTCTTCAAAAAAGCTATTGAGCTTTTCACTTTTTGTGGTGCATATTTTGCACTAATTGTGTTTTCTCCTAGTAGGAAAGCATTTTCCTTTGGTCACCCCGACGTTTATACGATCATAGATCGTTTTCTCTCATTAGTCCAACCTCAAATCAATATCATGAGGCAGTTCATTGAGGCTACCCGTAATGCCAATGTACGTGTGCTCAATGCTGAATTGAATCTGATTAATGATGCATTAGACATCGAGAAACAACGCGGTGATGATTTGAGTCATTTGTGTAGGATGACTGAGGATCCGTCTTGGTGGGATCGTCCCGTTGATGGGATGACCCAAGCTCAACTTGAATTATTGAAGATTGCATTGGAGGAGGTGGATAAACATGTTGCTCAACAAACTGATAGGCGTGTAATTTTGAATGCTCCCGGCCAAACTGAACAAGCTCAAAAGTTGCCCACAgaattttttcaaaatccaatGTTGCATTCTCATTTGTTGGGCTTCAATAATATGGGAGGAGGGGAAGGACCTTCCGGATCCTTTTGA 645 0.3953 MSSGKKTQGRKKIEIKKINKESDLNVTFSKRRSGLFKKAIELFTFCGAYFALIVFSPSRKAFSFGHPDVYTIIDRFLSLVQPQINIMRQFIEATRNANVRVLNAELNLINDALDIEKQRGDDLSHLCRMTEDPSWWDRPVDGMTQAQLELLKIALEEVDKHVAQQTDRRVILNAPGQTEQAQKLPTEFFQNPMLHSHLLGFNNMGGGEGPSGSF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00858 214 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Tsu06g00858 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tsu06g00858 214 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Tsu06g00858 214 PANTHER MADS BOX PROTEIN 7 179 - -
Tsu06g00858 214 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 179 - -
Tsu06g00858 214 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu06g00858 214 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu06g00858 214 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu06g00858 214 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu06g00858 214 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00858 Tsu-Chr6 7679344 7679988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00858 5 175 Type I MADS-box Gene Family AT5G60440 46.857 6.09e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu06g00858 SRF-TF 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00858 - - mtr:MTR_1g106070 213.001