Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00842 ATGTCGAGCGAAAGGAAAGGTCGAGGTCGCAAAAAGATTGAGATAAAAAAGATGAGCAATGAGATTCATCTGCAAGTGACTTTCTCAAAGCGTCGTAATGGGCTCTTTAAGAAAGCTAGTGAGCTATCCACTCTTTGTGGTGTAGATGTTGCGCTCATTGTATTTTCACCCGGTGAGAAGGTATTTTCTTTTGGTCATCCCAATGTTGATGCGGTCATCGATCGTTATCTCTCGCTCGTCCCACCTCAAAACAATAGCACCATGCAATTCATTGAGGCACAACGTAGTGCCAACATGCGCGAGCTCAACGCTCAGCTAACTCAGCTCAACATCGCATTGGACATTGAGAAGAAGCGTAGTGATGAGCTAAATCTTATGCTCAAGATGAACCATGCTCATCATTGGTGGGCTTGTCCCATTGAAGGGATGAACAAGGCTGAACTTGAAATATTCAAGAAAGCTTTGGAGGATATGAAGATACTTGTTGCTCTACATGCTCAAATGTTGGAGACGCAATTTTTTCAGAATTCCATGTTACAGCCTCATTTGTTTGGCTTCAACAACATGGGAGACCAAGGAGGATATGGACCCCCTGGATTCTTTTGA 606 0.4356 MSSERKGRGRKKIEIKKMSNEIHLQVTFSKRRNGLFKKASELSTLCGVDVALIVFSPGEKVFSFGHPNVDAVIDRYLSLVPPQNNSTMQFIEAQRSANMRELNAQLTQLNIALDIEKKRSDELNLMLKMNHAHHWWACPIEGMNKAELEIFKKALEDMKILVALHAQMLETQFFQNSMLQPHLFGFNNMGDQGGYGPPGFF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00842 201 SUPERFAMILY SRF-like 9 86 IPR036879 GO:0003677|GO:0046983
Tsu06g00842 201 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu06g00842 201 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu06g00842 201 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu06g00842 201 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu06g00842 201 Gene3D - 90 179 - -
Tsu06g00842 201 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 169 - -
Tsu06g00842 201 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tsu06g00842 201 PANTHER MADS BOX PROTEIN 7 169 - -
Tsu06g00842 201 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Tsu06g00842 201 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu06g00842 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tsu06g00842 201 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00842 Tsu-Chr6 7567277 7567882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00842 5 175 Type I MADS-box Gene Family AT5G60440 51.149 5.14e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu06g00842 SRF-TF 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00842 - - mtr:MTR_1g105905 236.113