Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00836 ATGGCTTTTTGGGGTGTTGAAATCAAACCTGGAAAGCCTTTTACTCACACATACGATGCTTCCAAAGGACGCCTTCACATTTCATTGGCCACTTTGGGACATGGCACTGCAATTACGAAAAGCACACTGCAATGTAATGTGGGAAACAAAAGCCCTGTTTATATTTGCACTCTTTATCCTGGAAAAACTGAGTCGTTGCAATTGAATTTGGAGTTTGAGGAAGCTGGTAATGTTATTTTATCCGTCATTGGCCCTCGGAGTATTCATCTCTGCGGTTATTATCTTGCTCATGGCCATTATACCAATACTCTTGATGATTCCGAATCATATGGAGAAGATATAGCTGATACAGAAACAGAGAAATCTGTTCACAGTGATGAAGATGACTACGATGATAGTTTTATTGATGACCAGGGTGATCCAGCAGTTTTCCCAACATCTCCTATTTCCGGTGAAGAAGATGCATCTTATGATAGCAGACGGAAAAGTGCGAAAGGCAGCCGAAGAAGGCTGAGGAAGAAGTTCCAGTTGGTAGAGTCGGATGATGATATCGATCTTGAAGAAAAGACAATTGCCAATGACAGTGTGCATGTACAATCTCAGGAAATTGATAATGAAGATAATCTACCAATTTCATTTATTTGCAAGAATAAAGCCTCTGGGAGGATCTTGGATCAGGAAATGGATGATAATGATGACAAAGAGGCAGTAGATACTGGCAAAAAAGACAGCGAAGACCCTGAGAATAGTACTATTGAACCAAAATTGAAAACCGACAACGTTGTTGCAGATAATCAGACTCATAGCAGGGAAGGTGaaccttcagatcccttggCAGTTCCTTGCACTGTTCCGGATGTTGGGGATtctaaaaagtcaaaaaagaaaaagaagggaaagGAAAAAGAGACCAAGAGTTCTTCTAATGACCATTCCACCGAACTGGATAATGCTGTGCAAGATGAGCAAAAAATGAACACAGCCCATGATCTCTTGGATCAGCAAATGGCGGATAATGTTGACAAAGAAGCAGTTGATGCTGGCAAAAATGAACAGCACCAGCAGCAAGCTGATGATAAGAAAGCTGAAACCGCGGATAAAATACTTCCTTCTTCACAGGTTGGTCAAGGACAGGATGATAAaccaaagagaaaaaggaaggaACGGTCAAAGGAGGAGACAATTTTTACTGCTGACGATGCTTGTATTAGCAATGTTGTTAACCTGCCACAGGGAAATGAAGGCAATAATCAGGACATAGTTAATAGGGATGTTAAGATTTCAGACAGTGTTGCACTGCCTTCCACTGAAACGGATTCTCCAAAGAAAACAAAGAGgagaaaaaaagaacataaaaacAAAGCTTCACTTCCTGAAGGTGACAATGGAAATGGTGAAGGTATCATTCAAGATGAAAAAGCCAACAAAGAGACAGCAGAGTCCGGTAGTTTGATTCATGAACTTTCTGAAACGAAAGAGCAACATCAGAAGCTAACAATTGAAAACAGTGGGGACAACGGGACTCAAGACAATCCTGATGGAAATCAATCTGAAGATAAGAAAgttaagaaaaagaagaagaaaagtaaaaGTCAAGGCAGTGAAGTTGTAAATTCTGAGTTGCCTGTATCGGCTGAGCCAAGTACTGAGCTGATGAAAGAGGATGGAAATAATATGGAGGATACGAAGTCTTCCCAAGTTAGAACATTGTCAAATGGACTTGTTATTCAAGAGTTAGAGGCGGGGAAAGAAAATGGGAAAATTGCTGCATCAGGGAAAAAGATCAGCATCAATTACACTGGCAAGTTGAAGGAAAATGGTGCGGAGGTTGAGTCAAATGCTGGCCAAGCCCCTTTCAAATTTCGCCTTGGTAAAGGAGAAGTTATTGAGGGTTTGGATATTGGCCTTGAAGGTAGCATGCGAGTTGGAGAAAAGAGAAGACTcgtaattccaccatcaatgACGTCTAAGAAGAATGGTGACAGTGAAAACATACCCCCGAATTCATGGTTGATTTATGAATTGGAACTTGTTAAAGTTCATTGA 2046 0.3842 MAFWGVEIKPGKPFTHTYDASKGRLHISLATLGHGTAITKSTLQCNVGNKSPVYICTLYPGKTESLQLNLEFEEAGNVILSVIGPRSIHLCGYYLAHGHYTNTLDDSESYGEDIADTETEKSVHSDEDDYDDSFIDDQGDPAVFPTSPISGEEDASYDSRRKSAKGSRRRLRKKFQLVESDDDIDLEEKTIANDSVHVQSQEIDNEDNLPISFICKNKASGRILDQEMDDNDDKEAVDTGKKDSEDPENSTIEPKLKTDNVVADNQTHSREGEPSDPLAVPCTVPDVGDSKKSKKKKKGKEKETKSSSNDHSTELDNAVQDEQKMNTAHDLLDQQMADNVDKEAVDAGKNEQHQQQADDKKAETADKILPSSQVGQGQDDKPKRKRKERSKEETIFTADDACISNVVNLPQGNEGNNQDIVNRDVKISDSVALPSTETDSPKKTKRRKKEHKNKASLPEGDNGNGEGIIQDEKANKETAESGSLIHELSETKEQHQKLTIENSGDNGTQDNPDGNQSEDKKVKKKKKKSKSQGSEVVNSELPVSAEPSTELMKEDGNNMEDTKSSQVRTLSNGLVIQELEAGKENGKIAASGKKISINYTGKLKENGAEVESNAGQAPFKFRLGKGEVIEGLDIGLEGSMRVGEKRRLVIPPSMTSKKNGDSENIPPNSWLIYELELVKVH 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00836 681 Gene3D Nucleoplasmin core domain 1 99 - -
Tsu06g00836 681 MobiDBLite consensus disorder prediction 115 165 - -
Tsu06g00836 681 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 592 681 IPR001179 GO:0003755
Tsu06g00836 681 PANTHER PEPTIDYLPROLYL ISOMERASE 425 681 - -
Tsu06g00836 681 MobiDBLite consensus disorder prediction 222 253 - -
Tsu06g00836 681 MobiDBLite consensus disorder prediction 319 333 - -
Tsu06g00836 681 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Tsu06g00836 681 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 425 681 - -
Tsu06g00836 681 MobiDBLite consensus disorder prediction 220 567 - -
Tsu06g00836 681 MobiDBLite consensus disorder prediction 302 318 - -
Tsu06g00836 681 Gene3D - 545 681 IPR046357 GO:0003755
Tsu06g00836 681 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 588 678 IPR001179 GO:0003755
Tsu06g00836 681 SUPERFAMILY FKBP-like 544 680 - -
Tsu06g00836 681 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 1 265 - -
Tsu06g00836 681 MobiDBLite consensus disorder prediction 335 366 - -
Tsu06g00836 681 MobiDBLite consensus disorder prediction 404 438 - -
Tsu06g00836 681 MobiDBLite consensus disorder prediction 378 396 - -
Tsu06g00836 681 PANTHER PEPTIDYLPROLYL ISOMERASE 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00836 Tsu-Chr6 7494202 7501687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00836 592 678 Calmodulin-binding Proteins AT5G48570 37.500 2.16e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00836 K14826 - gmx:100798135 595.119