Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00833 ATGAGCACCAAACAAGTTATTACATGCAAAGCTGCAATATGTTGGGGGTCAGGAAAAGGAGTGACAATGGAAGAGATACAAGTTGACCCACCAAAAGCAACTGAAATTAGGGTGAAGATGTTGTGTGCAAGTATTTGCCACACAGATATCTCAAGCATTCAAGGTTACCAATATAATAaatttcctctagcacttggaCATGAAGGAGTGGGTGTTGTAGAAAGTGTAGGTGACAGtgtaaaaaatgtgaaagaagGTGATATGATAATTCCAACATACATAGGTGAATGTCAAGAATGTGAGAATTGTATTTCAGGGGAAACAAATCTTTGCCTAAAACACCCTTTTACATTAACTGGTTTAATGCCggataacacttcaagaatgtCTATTAAAGGACAAAGATTGTACCATGTTTTGAGTTGTGCTACATGGTCAGAATACACGGTTGTTGATGCTAATTACATTCTTAAAGTTGATCCAAACATTGATCTTGCTCATGCAAGTTTCATTTCATGTGGATTTACAACTGGTTATGGAGCTGCTTGGAAAGAAGCTAAGGTTAAAAAGGGTTCAAGTGTAGCTGTTTTTGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGTGGAGCCAAGATGATGGGAGCAACTAAGATAATTGGTGTTGACAAAAAtgaaatgaagaaagaaaaaggagaaGCATTTGGAATGACTCATTTTATAAATCCTAGTGATTCTAATAAATCTGCTTTAGAATTGGTAAAAGAACTTAGTGATGGAATGGGTGTAGATTACGCCTTTGAGTGCACTGGAGCTCCCCCTTTACTTACTATTTCAGTGGAAGCCACAAAAATGGGTATAGGTAAAACAATAGCAATTGGTGCTGGACTTGAACCTATTGTTCCTTTTGGCTATCTTGCCATTTTACTTGGTAGGACATTAAAAGGTTCTATTTTTGGAGGGATAAAAGCTACATCAGATCTTTCCATCATTGCTAACAAATGTCACAAAGAGgAATTTCCTCTTGAAGAGCTATTCACCCATGAGATTCCGTTGATAGATATAAACAAAGCATTTGAATTGTTGAAGCAACCTGATTGTGTGAAAGTCGTCATCAAGATGTGA 1122 0.3476 MSTKQVITCKAAICWGSGKGVTMEEIQVDPPKATEIRVKMLCASICHTDISSIQGYQYNKFPLALGHEGVGVVESVGDSVKNVKEGDMIIPTYIGECQECENCISGETNLCLKHPFTLTGLMPDNTSRMSIKGQRLYHVLSCATWSEYTVVDANYILKVDPNIDLAHASFISCGFTTGYGAAWKEAKVKKGSSVAVFGLGAVGLGAISGAKMMGATKIIGVDKNEMKKEKGEAFGMTHFINPSDSNKSALELVKELSDGMGVDYAFECTGAPPLLTISVEATKMGIGKTIAIGAGLEPIVPFGYLAILLGRTLKGSIFGGIKATSDLSIIANKCHKEEFPLEELFTHEIPLIDINKAFELLKQPDCVKVVIKM 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00833 373 CDD liver_alcohol_DH_like 7 372 - -
Tsu06g00833 373 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 372 - -
Tsu06g00833 373 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Tsu06g00833 373 Gene3D - 178 316 - -
Tsu06g00833 373 Pfam Alcohol dehydrogenase GroES-like domain 34 159 IPR013154 -
Tsu06g00833 373 Gene3D - 13 368 - -
Tsu06g00833 373 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 163 331 IPR036291 -
Tsu06g00833 373 Pfam Zinc-binding dehydrogenase 201 322 IPR013149 -
Tsu06g00833 373 PANTHER ALCOHOL DEHYDROGENASE 4 372 - -
Tsu06g00833 373 SUPERFAMILY GroES-like 3 189 IPR011032 -
Tsu06g00833 373 SMART PKS_ER_names_mod 16 371 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00833 Tsu-Chr6 7448801 7452604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00833 34 365 Monolignol Biosynthesis Gene Families AT2G21730 27.434 2.81e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00833 K00121 - gmx:100798341 607.06