Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00792 ATGTCTCAAGCTCAAGGTTCTTCTTCTTATAATGACTCAGACATAGATAATAACGATTCAGGTTGTTGTTCCAACAGATCTGATGCTTCTGGAGTAGCTGAATTGAAGCTTTACAGAGCTTTTATATTCTCTGTTCCAATTTTCTTTACTttgattcttctttttcttttctatgttttttatttgagacCAAGAAGAGTTGATTGGTCTTCTATTAGGATGAGGTCTGTTTCTGTTCTACAACTTAATCATAACAATGCCATTTCAACTTCTGATTTGGGGTTGAATAAAGAATTGAGAGAGATGCTGCCTATCATTGTGTACAATGAAAGCTTCTTTGTGAAAGATACACAATGCTCAGTATGTCTTTTGGACTACCAATCGGACGACAGACTTCAACAAATACCTGCATGCGGCCATACGTTTCACATGAGTTGCATTGATCTTTGGCTTTCCAGCCACAGCACCTGCCCTCTTTGCCGTTTGTCGCTACTACCTACTGCTAAATCTTCAACTGAAACATCCAATATACAGGCCACAAACAATGAAGAAATGGAGATGCAACATAGCAATGAAGAAACACTAGCAATGGAACTCTCTGACTCAAGATCTACTAGGCATCAAGAAACCACCGTCATTCAAAATGTCTCTGGAGAAGTTGCGATCAGCGCTCACCACGTCAATCTTGAGGAGGAAAATGCGTGA 705 0.3801 MSQAQGSSSYNDSDIDNNDSGCCSNRSDASGVAELKLYRAFIFSVPIFFTLILLFLFYVFYLRPRRVDWSSIRMRSVSVLQLNHNNAISTSDLGLNKELREMLPIIVYNESFFVKDTQCSVCLLDYQSDDRLQQIPACGHTFHMSCIDLWLSSHSTCPLCRLSLLPTAKSSTETSNIQATNNEEMEMQHSNEETLAMELSDSRSTRHQETTVIQNVSGEVAISAHHVNLEEENA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00792 234 SMART ring_2 119 160 IPR001841 -
Tsu06g00792 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 168 IPR013083 -
Tsu06g00792 234 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 13 194 - -
Tsu06g00792 234 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Tsu06g00792 234 CDD RING-H2_EL5_like 118 161 - -
Tsu06g00792 234 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 13 194 - -
Tsu06g00792 234 Pfam Ring finger domain 118 161 IPR001841 -
Tsu06g00792 234 SUPERFAMILY RING/U-box 103 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00792 Tsu-Chr6 7077753 7081090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00792 27 188 C3H Transcription Factor Family AT4G10150 56.140 2.10e-65 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00792 K19039 - gmx:100794211 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00792 06 7077753 7081090 Tsu06g00792 06 7077753 7081090 ECH