Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00780 ATGGAAAGAGAATTTGAAAGAGGTTACATTAAAAAAGGACCATGGagtaatgaagaagatgaagtgttgTTGAAACATGTTAACAAGTATGGTCCTCGTGATTGGAGCTGCATTCGATCCAAAGGTCTTTTGCCACGAACAGGAAAATCTTGTCGGTTAAGATGGGTTAATAAGCTTAGACCTGACTTGAAAACAGGGTGCAAGTTTTCAGCAGAGGAGGAAAGAGTTGTGATTGAATTACAAGGGCAATTTGGGAACAGATGGGCAAAAATTGCGACGTATTTGGAAGGAAGAACAGACAATGATGTGAAGAATTTCTGGAGTAGCAGGAAAAAAAAGATGCAGAGGACATATCCAAGGACACCATCACCACCATCAAAGAAGCacaaaaacaaaggaaaaactATTCCTAATCCACTCCAAGTAGAAAAGGTTCCTGAAAGTGGTTCCAATCAGCTAGATGAAAACCTTACTCACCCAATTTCTTATATGGGAAACAAAGAAGTGTTCAAGATGATCAACCTTCCAGATTTGACAAAGCCAAACTACCAAGATTTGAAAAATGAACTTAATGCAGTTGAGATTGAAGAAGCTACTCCACTTCACACAGTACCTTCATTTGAGTCTTCATCAGGGTACAACTACAACTTTTCTCTACCCCCTGAATCACAAGTGGACTTTCCACTATTTCCAGAGTGTCAGGACCTTGTTCAAGAGCCTTTTGACCCAAATTTTATGGACATGTTTGAGCAGAAAAAGTGTTCAGAAAGTGTATGGAGTCAGAAGTTTGGGACCAGGTTGTCAACTTTTGGACTTGAAGGAACTTCTCAGAGTGCAAGCTCAAGCTGCTCCTTTAAGGATATCCCTACTGAGATATTTGAATACTTTGCTCAATAG 897 0.3813 MEREFERGYIKKGPWSNEEDEVLLKHVNKYGPRDWSCIRSKGLLPRTGKSCRLRWVNKLRPDLKTGCKFSAEEERVVIELQGQFGNRWAKIATYLEGRTDNDVKNFWSSRKKKMQRTYPRTPSPPSKKHKNKGKTIPNPLQVEKVPESGSNQLDENLTHPISYMGNKEVFKMINLPDLTKPNYQDLKNELNAVEIEEATPLHTVPSFESSSGYNYNFSLPPESQVDFPLFPECQDLVQEPFDPNFMDMFEQKKCSESVWSQKFGTRLSTFGLEGTSQSASSSCSFKDIPTEIFEYFAQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00780 298 PANTHER TRANSCRIPTION FACTOR DUO1 1 297 - -
Tsu06g00780 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Tsu06g00780 298 PANTHER MYB TRANSCRIPTION FACTOR 1 297 - -
Tsu06g00780 298 Gene3D - 11 64 - -
Tsu06g00780 298 MobiDBLite consensus disorder prediction 144 158 - -
Tsu06g00780 298 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Tsu06g00780 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Tsu06g00780 298 Gene3D - 67 139 - -
Tsu06g00780 298 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Tsu06g00780 298 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Tsu06g00780 298 SMART sant 65 113 IPR001005 -
Tsu06g00780 298 SMART sant 11 61 IPR001005 -
Tsu06g00780 298 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Tsu06g00780 298 CDD SANT 68 107 IPR001005 -
Tsu06g00780 298 CDD SANT 14 59 IPR001005 -
Tsu06g00780 298 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Tsu06g00780 298 MobiDBLite consensus disorder prediction 108 158 - -
Tsu06g00780 298 MobiDBLite consensus disorder prediction 110 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00780 Tsu-Chr6 6935100 6937058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00780 4 117 MYB Transcription Factor Family AT3G60460 76.316 4.70e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g00780 Myb_DNA-binding 4.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00780 K09422 - gmx:121173231 410.223