Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00774 ATGGAGCTTGATTTGAATCAGGAACCTATGGATCATACTAGTAGTAGTACATCAGTAGTTGCATTTGATTCTGTATTGGAAGAATTGGAAGCGGCGGAGGAAAATATACGGAATCGAATTGTACATCTCGAAGCAATTACTTCGAGAGCGAGGCAGCGTCAGAGGTTGCCGAGAGTGCAGACTCCGATTCAGATAACTAATTTTACAGGAGAAGCAGTAGCTGCGGATGGTGTTCAAGACGAAGAAGGAAGGGTGGTGGTGGAGCAGAATGTTGTTGCAGAAAGAGTAGTTGAAAGTGTGAAAGGGGGAAAAAGGAAAAGTGCTCATTTAGTTGCGAAAGCTTTGGGGATTGAAGATATTGATGATGGTAAAATGGAGGAGAGTAGTGGGAATTGTTTTGATTGTAATATATGTTTGGATATTGCAAGAGATCCTGTTTTGACATGTTGTGGTCATTTGTTTTGTTGGCCGTGTTTTTATCAGTTGTCGTATGCGTATTCGAAAGCAAAGGAATGTCCTGTTTGTAAAGGAGAGGTTACTGAATCGGGTATTATTCCGATTTATGGGAATGGAAATGGCGGTGGTGATCGTCAGATGGAAATGAAAGAAGCCGGTTTAAGGGTTCCTCCTCGACCCAAGGCACCTAGAGTTGAGAGTCTTAGACAGAAGTTGATAAGCCGAGGagtgtcttcttcttcttctattgtACAAAGCCTTCGAAGGTTTCATAACCGAATTGGTGGATTTGGAGAGCAAGCTCAGTTGGAAAGTTCTAATACAACAGCTGATAGAAATAATGGTTTGGTTGATCAATCTCGCACGCAGACAGATAATAATCAACATGCTGGTTCTGAACAGGTGTCAAGGTTGCTGGGGCAAGGAGCTTCTTCATTTTCGGTGCTTTCAACAGCATTAAATTCGGCAATGGATTCTGCAGAAAGATTAGTTCAGGACCTTGAATCATATATCCATGGTCGCGGAGTAGGAGGAAACAGAGAGCAAAATCCTCGTGTTGTTACTAGAAGTGTTGCTGCTACAAACGGGTCAGAGAGTCGTGCTCAAGATGTTGTTGCCGTGACCAATTCTGCAGCTGCAGCAGCTTCTGTGTCTCCTTTATCTAGCAATGTTGACAATATTGCTGCTATAGGTTCAGAAACTCAGACAACTGATAGAAACGTTCAGATTAGTCTGCCAGACCCTTCTTCATCAAACGGCAGACGAAGAAATGACGTTTCAGGACAAGTTTCAATTGAACCAACAAGAAGAAGACGTAGAAGAAGATTGAGATGA 1290 0.4194 MELDLNQEPMDHTSSSTSVVAFDSVLEELEAAEENIRNRIVHLEAITSRARQRQRLPRVQTPIQITNFTGEAVAADGVQDEEGRVVVEQNVVAERVVESVKGGKRKSAHLVAKALGIEDIDDGKMEESSGNCFDCNICLDIARDPVLTCCGHLFCWPCFYQLSYAYSKAKECPVCKGEVTESGIIPIYGNGNGGGDRQMEMKEAGLRVPPRPKAPRVESLRQKLISRGVSSSSSIVQSLRRFHNRIGGFGEQAQLESSNTTADRNNGLVDQSRTQTDNNQHAGSEQVSRLLGQGASSFSVLSTALNSAMDSAERLVQDLESYIHGRGVGGNREQNPRVVTRSVAATNGSESRAQDVVAVTNSAAAAASVSPLSSNVDNIAAIGSETQTTDRNVQISLPDPSSSNGRRRNDVSGQVSIEPTRRRRRRRLR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00774 429 Pfam zinc-RING finger domain 135 176 IPR001841 -
Tsu06g00774 429 MobiDBLite consensus disorder prediction 384 416 - -
Tsu06g00774 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 378 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tsu06g00774 429 ProSiteProfiles Zinc finger RING-type profile. 135 176 IPR001841 -
Tsu06g00774 429 MobiDBLite consensus disorder prediction 384 429 - -
Tsu06g00774 429 MobiDBLite consensus disorder prediction 251 285 - -
Tsu06g00774 429 SUPERFAMILY RING/U-box 130 188 - -
Tsu06g00774 429 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 378 - -
Tsu06g00774 429 SMART ring_2 135 175 IPR001841 -
Tsu06g00774 429 MobiDBLite consensus disorder prediction 250 285 - -
Tsu06g00774 429 CDD RING-HC_AtRMA_like 133 177 - -
Tsu06g00774 429 Coils Coil 26 46 - -
Tsu06g00774 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 214 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00774 Tsu-Chr6 6893214 6895230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00774 128 411 C3H Transcription Factor Family AT3G58030 32.919 1.25e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00774 K10666 - gmx:100794016 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00774 06 6893214 6895230 Tsu06g00774 06 6893214 6895230 ECH