Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00772 ATGTTTCTATGGGCAAGTACTGGAGGTAGTTACCGTGTTAGTGCATCTAGTACGCCTATCAATACAAGTGGAAAATCTGATGGAGATGATATTGAATCACGATGTGATGTTTACATATGGGGAGAGGTTTTTGCAGACGGATTTCCTTCTAAGACAGATGTGTTGATCCCTAAGCTCTTAGAGTCAAAACTTTATCTTGATGTTCATAACATTGCATCCAGTGCACATCACGTTGCTATAGTAAACAAGAGAGGAGAGGTTTTCACCTGGGGAAAAGAATCTGGAGGAAGACTCGGTCACGGAATTGATAAAGATTTTGACAAGCCTAAACTAGTTGAGTTTCTTGAAGATGTTATTTTGGATATTGTTGCATGTGGAGAGTTTCATACATGTGCTGTGTCTAAATCTGATGACTTTTTCACCTGGGGTGATGGTGCACATAATGTTGGACTTCTTGGACACGGTAATGAGGCTAGTCACTGGATACCAAAGAGTGTCAATGGCTTTTTGGATGGACTTCAAGTCGTATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACCTCAAATGGAAAACTGTTTACCTTTGGAGATGGAACATTTGGTGTGTTAGGCCATGGTGATCAAGAGAGTGTATTGTATCCAAAGGAAGTACAATTATTAAGTGGACTGAAGACTATGAAGGTTGCTTGCGGAGTATGGCACACTGCAGCTattgttgatgttgtttttcAATCTGATTCAAATGTTTCATCATGGAAACTCTTCACATGGGGTGACGGCGACAAATATCAATTAGGCCATGGAAACAAGGAAACATGTCTGAAACCAACGCGTGTCTCGCCACTTATTGAATATAATTTCCAGCAGATAGCATGCGGACACACCATGACTGTTGCTCTCACTACATCTGGTCATGTATTTGCAATGGGAAGCACGGAAAATGGTCAATTAGGAAATCCAAATTCTGCTGGAAAAGTACCTACTTTAGTTCAAGGTAAGTTGCTCGGTGAATTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGCTGTTTTGACTTCAAAAAAAGAACTATATACATGGGGAAAAGGTTCTAACGGAAGACTAGGACATGGTGACACAGAAGATAAAAAATCTCCTACACTTGTGGTAGCCTTGAAAGACAGGCATATAAAATATATCTCATGTGGTTCAAACTTTACGTCTTGTATATGTATCCCTAAATCGGTCACTGGAACTGACCAATCTGTTTGCTTTGGTTGTAGACAAGCATTTGGCATAACAAGAAGAAGGCACAATTGTTATAATTGTGGATTGGTTTTCTGCTATACTTGTAGTTCTAACAAGGCATTCAACGCTGCACTGGCTCCAACATTTGAAAAACCTCACCGTGTATGTGATACTTGTTTTACTAAGCTTAGAGTTGACACCGATGATCCTTCAAAGTTTAATGGTAAAACTGCTCCTTCTCATTGTTCCACAACTGGTAGGGAAGGATTAGACCAAAGTAATTTAAGGTCTACGAAAACTCTCTTCTCTTCTATAACTGAACCAGTAAAATACCATGAAATAAGGAATAATAAGCCTGGAACTGAATATGGTACTACTTCTTTCATGAGAGCTTCTTTAGTTCCATCTATTTTGCAATTGAAAGATATTGCATTTCCAAGTTCATTGAATTCTATTCAAAGTGGTTTGAAGCCTTCTACACCCCCTAGTTCATCACAAAGTCCCACATCCCCACACACATGTAGATCAAGCCTTCCACCACCTTCTGACAATCCAAGAATTTCTGGTGTTCTTATCAATAGTTTGAGAAGAGCAAATTATGTTTTGATCCAACAAGTTTCGGATTTGCAGAGACAAATTCGAGGTTTGAAGCAGATAAGTGGCGTGAAGGATGTGCAACTTCAGAAGCTTCATAGAAAGGCCAAGGAAGCTATTGCCTGGGCTGCAGTGGAATCTTCTTGTCATACAGAATCAAAAGAATTTATCGAATCTACTAAACATCAGTTGAAGGAAGTGACTGAGAAGCTACCAGTAGATATTCCAGAAACTAATATCTTGAGTGCTATACAAACTCGAGCTGAAGATTTTCTAAAAGAAATTTCAGAATCTGAAACATCAGAGTTGGAGTCCAAGCAACAAGAGGTTGAGTCTTGTCTAGAAAAGTTAGTAGAGTCTTTGCAACAGAATGCACCTGATATATCTACCCCGCCTAGTGGAACTTTTGAACTGCAAGATCATATACTAAAACAAAATGCAGATGTTTTAGGAGATGACCATTGTCAAGATAAAGGAAATATCCTTGAAGAAATTAAGAAACCAACATTGGAGTCAAAGCAACAAAATTCACATGATATATCTACCCTGCATAGTGAAACTTCTGAACTGCAAGATCATAGACTAGAACAAAATGCTGATGTTTTAGGAGATGACCGTTGTCAAGATGAAGGAAATATCCTTGACGAAATTAACAAAACAACATTGGAGTCAAAGCCACAAAATTCACATGATATATCTACTCCGCATAGTGGAACTTCTGAACTGCAAGATCATAGACTAGATCAAAATGCTGATACTGCAAGGGTCGATCAATCTGAGGGTGGAATAAATGTCCGGCAAGAAAATAATGGATCGACAATATCTAGTGTTGGAGAAACGTTATCACCCCAAAACTCAGCAAATGGTTCAATATCACCACTGGACAGTTCAAGAGATGAGAGACTACAAGAAAAACAAGTCTTTGAAAAATTTGAGTCTGGTGTTTATGTGTTAGTCGTGCTACGGGATGATGgaatcaaaatttttaaaagagttAAGTTCAGTAAGCGAAGGTTCACCGAAAGACAAGCAGAAGAATGGTGGAGCCATAACAAAGGTAGGGTTCTTAGCAAATACTGTCCAATCCATCAAAAGTTAAATCAACCATGTAATAACATTGCACCAAATGTTAAAGAAAATATTGAGTCATCTCCTTCTTAG 2991 0.3838 MFLWASTGGSYRVSASSTPINTSGKSDGDDIESRCDVYIWGEVFADGFPSKTDVLIPKLLESKLYLDVHNIASSAHHVAIVNKRGEVFTWGKESGGRLGHGIDKDFDKPKLVEFLEDVILDIVACGEFHTCAVSKSDDFFTWGDGAHNVGLLGHGNEASHWIPKSVNGFLDGLQVVSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDQESVLYPKEVQLLSGLKTMKVACGVWHTAAIVDVVFQSDSNVSSWKLFTWGDGDKYQLGHGNKETCLKPTRVSPLIEYNFQQIACGHTMTVALTTSGHVFAMGSTENGQLGNPNSAGKVPTLVQGKLLGEFVEEISCGAHHVAVLTSKKELYTWGKGSNGRLGHGDTEDKKSPTLVVALKDRHIKYISCGSNFTSCICIPKSVTGTDQSVCFGCRQAFGITRRRHNCYNCGLVFCYTCSSNKAFNAALAPTFEKPHRVCDTCFTKLRVDTDDPSKFNGKTAPSHCSTTGREGLDQSNLRSTKTLFSSITEPVKYHEIRNNKPGTEYGTTSFMRASLVPSILQLKDIAFPSSLNSIQSGLKPSTPPSSSQSPTSPHTCRSSLPPPSDNPRISGVLINSLRRANYVLIQQVSDLQRQIRGLKQISGVKDVQLQKLHRKAKEAIAWAAVESSCHTESKEFIESTKHQLKEVTEKLPVDIPETNILSAIQTRAEDFLKEISESETSELESKQQEVESCLEKLVESLQQNAPDISTPPSGTFELQDHILKQNADVLGDDHCQDKGNILEEIKKPTLESKQQNSHDISTLHSETSELQDHRLEQNADVLGDDRCQDEGNILDEINKTTLESKPQNSHDISTPHSGTSELQDHRLDQNADTARVDQSEGGINVRQENNGSTISSVGETLSPQNSANGSISPLDSSRDERLQEKQVFEKFESGVYVLVVLRDDGIKIFKRVKFSKRRFTERQAEEWWSHNKGRVLSKYCPIHQKLNQPCNNIAPNVKENIESSPS 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00772 996 CDD FYVE_like_SF 420 472 - -
Tsu06g00772 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 136 IPR000408 -
Tsu06g00772 996 Coils Coil 713 733 - -
Tsu06g00772 996 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 723 976 - -
Tsu06g00772 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 488 IPR013083 -
Tsu06g00772 996 MobiDBLite consensus disorder prediction 564 597 - -
Tsu06g00772 996 MobiDBLite consensus disorder prediction 828 850 - -
Tsu06g00772 996 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 5 719 - -
Tsu06g00772 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 137 191 IPR000408 -
Tsu06g00772 996 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 414 476 IPR017455 -
Tsu06g00772 996 Pfam Regulator of chromosome condensation (RCC1) repeat 256 302 IPR000408 -
Tsu06g00772 996 Pfam Regulator of chromosome condensation (RCC1) repeat 305 354 IPR000408 -
Tsu06g00772 996 Pfam Regulator of chromosome condensation (RCC1) repeat 191 240 IPR000408 -
Tsu06g00772 996 Pfam Regulator of chromosome condensation (RCC1) repeat 85 133 IPR000408 -
Tsu06g00772 996 Pfam Regulator of chromosome condensation (RCC1) repeat 140 187 IPR000408 -
Tsu06g00772 996 Pfam Regulator of chromosome condensation (RCC1) repeat 360 406 IPR000408 -
Tsu06g00772 996 Gene3D - 253 410 IPR009091 -
Tsu06g00772 996 SMART fyve_4 409 477 IPR000306 GO:0046872
Tsu06g00772 996 Pfam Transcription factor regulating root and shoot growth via Pin3 914 969 IPR013591 -
Tsu06g00772 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
Tsu06g00772 996 SUPERFAMILY FYVE/PHD zinc finger 413 479 IPR011011 -
Tsu06g00772 996 MobiDBLite consensus disorder prediction 828 908 - -
Tsu06g00772 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 192 243 IPR000408 -
Tsu06g00772 996 SUPERFAMILY RCC1/BLIP-II 34 410 IPR009091 -
Tsu06g00772 996 Pfam FYVE zinc finger 415 475 IPR000306 GO:0046872
Tsu06g00772 996 ProSiteProfiles BRX domain profile. 915 970 IPR013591 -
Tsu06g00772 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Tsu06g00772 996 MobiDBLite consensus disorder prediction 864 906 - -
Tsu06g00772 996 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 230 240 IPR000408 -
Tsu06g00772 996 Gene3D - 14 252 IPR009091 -
Tsu06g00772 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 305 IPR000408 -
Tsu06g00772 996 PRINTS Chromosome condensation regulator RCC1 signature 178 194 IPR000408 -
Tsu06g00772 996 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Tsu06g00772 996 PRINTS Chromosome condensation regulator RCC1 signature 137 153 IPR000408 -
Tsu06g00772 996 PRINTS Chromosome condensation regulator RCC1 signature 194 208 IPR000408 -
Tsu06g00772 996 PRINTS Chromosome condensation regulator RCC1 signature 295 313 IPR000408 -
Tsu06g00772 996 PRINTS Chromosome condensation regulator RCC1 signature 353 374 IPR000408 -
Tsu06g00772 996 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 5 719 - -
Tsu06g00772 996 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 723 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00772 Tsu-Chr6 6879587 6885560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00772 914 969 Major Intrinsic Protein MIP AT1G31880 35.714 4.93e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00772 - - mtr:MTR_4g029410 1372.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00772 06 6879587 6885560 Tsu04g01494 04 15380611 15381989 PCT