Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00755 ATGAAAAGTCATCATCATAATCTTCTTCATTCTTCCTTCACTTCTAATAATAATTCCATCCAACCCTTAAGCtcaaataatcaattaacaAAAAAAGCTATGGCAATATCACCCCAAACATTCCCAACAACTAAACGACCACCTTCAGAAACGTCGTCGTTTATTACTCCAAACTTAACCAATTTCAATCTTCTTCACTCTCTATTACACCTCACACAACAAATTTGTTCATTAAACGCAGCACCTTGGTGTCGTTTTCTCTTAAACAAAATTTCCTcttcaacaatcaacaaaacgCATCTTCTAGGTGTCGTTTTCGATGACCTAATTCGTAATTCAACTACGATTACAATCTCGAATTCATCTTCAATTTCAACTAATTCTTTCGTTTTGTGTCTTGAAGAAATGTATATTGTGTTACATAGgattaaaaaattgattgaagatTGTTCTAATGGAAGTAAATTTTCAGTTTTAATGCAAATTGAAACTGTTGCTGATAATTTCAATAAACTTACCGGTGAATTATCGACGCTTCTTGATGTTTTTCCGATTCATGAAATGAGCTTAAACGACGACGTTTTGGAGCTTATTGTTTTGATCAGAAAACAATGTTCAGAATCGAAGAAAAATAAGCTTGGAGAAGAACAGATTAATCTCAGAAACGATGTCGTTTTTGTGCTTGAAGGAATCAAGAGAGAGATTGTTCCGAATGAAGAAAAGCTAGCTTCGATTTTCGAGAAATTGGAGATTCGTGATTCTTCAAGTTGTAGAAGTGAAATTGAGAATCTTCAAGAAGAAATTCAGAATCGAAACGAAGAACAATCGAAATCTGAGATCGTTGCTTTGATCGGACTCGTTCGTTATGCGAAGTGTGTTCTTTTTGGAGCTTCAACGCCGTCGTCGAGAATTGAGACTCTACGGCGGAATCAGTCGTTGGAGATTGTTGTTCCGGCGGATTACCGGTGTCCGATAAGTCTTGAACTGATGCGAGATCCTGTCGTCGTGGCAACAGGACAGACGTACGATCGTGGCTCTATAAAATTATGGATGGATTCTGGTCACAACACGTGTCCTAAAACAGGTCAAAGCCTGGCCCACACGGATTTAATACCTAACCATGCTTTGAGAAATATGATAGCTTTGTGGTGTAAGGAACAGAAAATTCCATTTGAAGGTGAAACGGTTACTGTTAAAGCTAACGGTAGTTTGATGAATAAAACAGCTTTGGAAGCAACGAGAATGACGGcgttatttttagtcaaaaagttGACTAACGGTTGTTTAGTTTCGGAGTCTCGAGACATGGAAGAAATGAATGCAGTTGTGTATGAGCTTCGGGTGTTGGCTAAAACAGACTCGGAGAGCCGAGCCTGTATTGCTGAAGCCGGAGCTATAGAGattttggttcggtttttaagtTATGAAGTTGGTTTGCAACATCCGAGCCTACAAGTTAATGCTGTGACAACGATTTTAAATCTTTCGATACTTGAAGTGAATAAGACAAGGATAATGGAAATTGACGGCGTGTTAAATGGAGTAGCGGAGGTTTTACGGTCGGGTGCCACGTGGGAGGCGAAAGCAAATGCAGCTGCTACGGTTTTTAGTTTAACTGGAGTGATTGCTTTTAGAAAGCGGTTAGGGAGGAAGACACGTGTCGTGAGTGGATTGGTTGAGTTGGCGAAATGTGGGCCCGAGGGTGCGAAAAGGGACGCGCTTGCGGCTATTTTGAATTTAGCAGCAGACCGTGAGACAGTAGGGAGATTGGTTGAGAGTGGGGCGGTGGAAATGACGGCAGGGATTATGGCAGTGATGCCAGAGGAGGCAGTGACAATACTTGAAGCAGTGGTGAAGCGTGGAGGATTGGTAGCTGTTGCGGCGGCTTTTGTGGGGATAAAGAAATTGGGAACGGTTTTGAGGGAGGGATCAGAGAGGGCAAGAGAGAGTGCCGCGGCAACGCTTGTGACAATGTGTAGGAAAGGTGGATCGGAGATTGTGGCGGAACTAGCTGGGATTCATGGTGTTGAAAGGGTGATTTGGGAGTTGATGGCAGTGGGGAGTGTGAGAGGCAGGAGGAAGGCGGCGACATTGTTGAGGATTTTACGGCGTTGGGCAGCGGGTTTAGATGGTGGCGAAACGGAAGGGTTTACATCAACAAACACTTTTGTTAGTACGTCAACTACTGTGGTTGTTCCAACTCCAGCTTCATTAGCACAGTAA 2223 0.4103 MKSHHHNLLHSSFTSNNNSIQPLSSNNQLTKKAMAISPQTFPTTKRPPSETSSFITPNLTNFNLLHSLLHLTQQICSLNAAPWCRFLLNKISSSTINKTHLLGVVFDDLIRNSTTITISNSSSISTNSFVLCLEEMYIVLHRIKKLIEDCSNGSKFSVLMQIETVADNFNKLTGELSTLLDVFPIHEMSLNDDVLELIVLIRKQCSESKKNKLGEEQINLRNDVVFVLEGIKREIVPNEEKLASIFEKLEIRDSSSCRSEIENLQEEIQNRNEEQSKSEIVALIGLVRYAKCVLFGASTPSSRIETLRRNQSLEIVVPADYRCPISLELMRDPVVVATGQTYDRGSIKLWMDSGHNTCPKTGQSLAHTDLIPNHALRNMIALWCKEQKIPFEGETVTVKANGSLMNKTALEATRMTALFLVKKLTNGCLVSESRDMEEMNAVVYELRVLAKTDSESRACIAEAGAIEILVRFLSYEVGLQHPSLQVNAVTTILNLSILEVNKTRIMEIDGVLNGVAEVLRSGATWEAKANAAATVFSLTGVIAFRKRLGRKTRVVSGLVELAKCGPEGAKRDALAAILNLAADRETVGRLVESGAVEMTAGIMAVMPEEAVTILEAVVKRGGLVAVAAAFVGIKKLGTVLREGSERARESAAATLVTMCRKGGSEIVAELAGIHGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGETEGFTSTNTFVSTSTTVVVPTPASLAQ 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00755 740 SMART Ubox_2 320 383 IPR003613 GO:0004842|GO:0016567
Tsu06g00755 740 MobiDBLite consensus disorder prediction 8 24 - -
Tsu06g00755 740 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 47 720 - -
Tsu06g00755 740 SMART arm_5 453 497 IPR000225 GO:0005515
Tsu06g00755 740 SUPERFAMILY RING/U-box 313 390 - -
Tsu06g00755 740 Pfam U-box domain 317 388 IPR003613 GO:0004842|GO:0016567
Tsu06g00755 740 Coils Coil 254 281 - -
Tsu06g00755 740 MobiDBLite consensus disorder prediction 1 24 - -
Tsu06g00755 740 CDD RING-Ubox_PUB 321 363 IPR045210 -
Tsu06g00755 740 SUPERFAMILY ARM repeat 421 702 IPR016024 -
Tsu06g00755 740 PANTHER U BOX DOMAIN-CONTAINING 47 720 - -
Tsu06g00755 740 Gene3D - 412 702 IPR011989 -
Tsu06g00755 740 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 464 510 IPR000225 GO:0005515
Tsu06g00755 740 ProSiteProfiles U-box domain profile. 316 390 IPR003613 GO:0004842|GO:0016567
Tsu06g00755 740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 395 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00755 Tsu-Chr6 6704634 6706884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00755 42 738 U-box Gene Family AT5G01830 53.617 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00755 - - cam:101506886 1153.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00755 06 6704634 6706884 Tsu06g00755 06 6704634 6706884 ECH