Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00734 ATGAATATTGTTCTTAATTGCATGATTTCTCTTGTATTACTTTATTCTCTTATGTTAACCCCTTGTTATGGCCTCAACCGTAAATTATTTAATGTAtctcaaattcaaattgataATAATGATCAATTTCAAATGGGAATAGCTACATGGTATGGACCACCAGAGGGTGCTGGATCGGATGGTGGTGCATGTGGATATGTTAATAGTGTAGAGAACCCTCCACTTAATAAAATGATATCAGCTGGAGGTGCATCTCTTTTTAATGGAGGCAAAGGATGTGGTGCTTGTTATGAGGTGAAATGCAATTCAAATAGTGCATGCTCAGGAAATCCCATGACTGTGATGATAACTGATAATTGCCCTGAATGTGAGCCTGGCCATTTTGACCTAAGTGGAACTGCCTTTGGTTCCATTGCACAACAAGGTCAAGCTCAAAATCTTCGCAATGCTggaaaaattaatattcaataCAGAAGGGTTGCATGCTCTTTTGGGAATTCAATAACCTTTGCAGTTGATAGTGGATCCAACCAATTCTATTTTGCAACAGAAATAGAATATGAAAATGGAGATGGTGACATTATAAATGTTGAAGTGAGCCAATCAAACACATGGCTTCCAATGCAACGTTCTTGGGGTGCAAGATGGGCTTTGAACAAAGGTTCACAATTCCAAACTCCATTTTCTATTAAGATCACACAAAGTGGAAGTGGTGGACAGAAAACTATAATAGCTTCTAATGTTATCCCACCAAATTGGCAACCTGGTCAAGTTTATCGTTCAGCGGTTAATTTCTAG 798 0.3697 MNIVLNCMISLVLLYSLMLTPCYGLNRKLFNVSQIQIDNNDQFQMGIATWYGPPEGAGSDGGACGYVNSVENPPLNKMISAGGASLFNGGKGCGACYEVKCNSNSACSGNPMTVMITDNCPECEPGHFDLSGTAFGSIAQQGQAQNLRNAGKINIQYRRVACSFGNSITFAVDSGSNQFYFATEIEYENGDGDIINVEVSQSNTWLPMQRSWGARWALNKGSQFQTPFSIKITQSGSGGQKTIIASNVIPPNWQPGQVYRSAVNF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00734 265 Gene3D - 27 163 IPR036908 -
Tsu06g00734 265 Pfam Lytic transglycolase 80 157 IPR009009 -
Tsu06g00734 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 167 IPR007112 -
Tsu06g00734 265 SUPERFAMILY Barwin-like endoglucanases 41 164 IPR036908 -
Tsu06g00734 265 Gene3D - 164 265 IPR036749 -
Tsu06g00734 265 SMART dpbb_1 79 157 IPR007112 -
Tsu06g00734 265 PANTHER EXPANSIN-B3 3 265 - -
Tsu06g00734 265 Pfam Expansin C-terminal domain 168 250 IPR007117 -
Tsu06g00734 265 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Tsu06g00734 265 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Tsu06g00734 265 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Tsu06g00734 265 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Tsu06g00734 265 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Tsu06g00734 265 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Tsu06g00734 265 PRINTS Major pollen allergen Lol pI signature 81 92 IPR005795 GO:0005576|GO:0019953
Tsu06g00734 265 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Tsu06g00734 265 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576|GO:0019953
Tsu06g00734 265 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Tsu06g00734 265 PRINTS Major pollen allergen Lol pI signature 101 111 IPR005795 GO:0005576|GO:0019953
Tsu06g00734 265 PRINTS Major pollen allergen Lol pI signature 237 254 IPR005795 GO:0005576|GO:0019953
Tsu06g00734 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 261 IPR007117 -
Tsu06g00734 265 SUPERFAMILY PHL pollen allergen 167 261 IPR036749 -
Tsu06g00734 265 PANTHER EXPANSIN-LIKE PROTEIN B1 3 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00734 Tsu-Chr6 6486491 6489188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00734 19 265 Expansin Gene Family AT1G65680 53.755 8.05e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00734 - - gmx:100786475 364.385