Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00733 ATGAGAGCTCATGGCATAGGTGACGAAACCGGTCAAATGGATGACGATGATCCGGCAAGCGATTGGGAAGGTGGTAATGTCCCACAAACAAGTAACAAACGTATGTATTCTCTAAGAACAAATCCCAACAAGCTAAAAAGTTGTAGGGTATGTGAGCATTGTGGCAAAGAATTTTTCTCTTGGAAATCGTTCCTTGAACATGGAAAATGCAACTCCGATGATGCAGATGAAGAGTCTCCTATATCCTCTCCAGAATCCGACACCATGGCAGACGATGATGATGGTGTCGGTGGCAGGAGAGGATGCGGCTGGTCAAAGAGGAAAAGGTCATTGCGAACTAAAGTAGGTAGttataataacaattttaattGTCCTTCAACCGAAGAAGAAGACTTAGCAAATTGTTTAATGATGTTGTCCAATGCTATTGTTGACCCTCTTGAGGTTGAACCTGAAGAATCATGTGCCTCAGCTAGCAAagatgaagaaagaagaaatcCTATGAATTTCATTGCACCATTGGCTTATAGAATCCCCTATGaaaacaccaacaccaacaacaataacaacaaagcCAAAGGTGTTGCTAAAGGGTTATTTGAATGCAAAGCATGCAAAAAGGTTTTCAACTCACATCAAGCATTAGGTGGCCATAGAGCAAGTCACAAAAAGGTTAAGGGATGTTTTGCAGCAAGACTTGATCAAAATCTTGATGATAATATTGTTGAGGATGATGCTATCACACATGATGAATTTTTCccttcaaaatcaaacacaaccCTACAATATGATCAAGGGACCTCCAATAACCCTACATTGATGGCTTCTTCTTCCAAGAGAAAATCTAAAGTGCATGAATGTTCAATTTGTCATAGGAGTTTCTCTTCTGGACAAGCATTAGGTGGACACAAAAGATGTCATTGGATCACCTCGAATGCTCCGGACACATCAACATTGGCTAGGTTTCAACAATTTCAAGACCATATTGAACAAATACCTAAATTTGATAACTCTTCTGAGCCAATTGATCTCAAACTTGACCTTAATCTTCCGGCTCCTACCAATACACAAATTTACTTGCAACCCCCGTGGGGCGCTAATGCAAGTACGACAAAGGACAACATCATCAAAGAAGATAACAATAGTCAACGTATGAATCAACAAACtcaaaacaagaacaacaacaataacaacaagaacaacaaaaacCTAGTCCATCAAAATAacgacaataataatgataataacaaaaataacaacCTTAATACTTTGGTACAAAATGTTGATAATGAAGATGATAGAAAAACCAAGTTGGCAAAACTAAGTGAGTTAAAGGATGTCATCAATATTGGTGGAAGTTCTTCACCATGGTTGCAAGTTGGAATTGGTGCAACAAGTGATGTGAGGAATGATacgtaa 1419 0.3502 MRAHGIGDETGQMDDDDPASDWEGGNVPQTSNKRMYSLRTNPNKLKSCRVCEHCGKEFFSWKSFLEHGKCNSDDADEESPISSPESDTMADDDDGVGGRRGCGWSKRKRSLRTKVGSYNNNFNCPSTEEEDLANCLMMLSNAIVDPLEVEPEESCASASKDEERRNPMNFIAPLAYRIPYENTNTNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDQNLDDNIVEDDAITHDEFFPSKSNTTLQYDQGTSNNPTLMASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQDHIEQIPKFDNSSEPIDLKLDLNLPAPTNTQIYLQPPWGANASTTKDNIIKEDNNSQRMNQQTQNKNNNNNNKNNKNLVHQNNDNNNDNNKNNNLNTLVQNVDNEDDRKTKLAKLSELKDVINIGGSSSPWLQVGIGATSDVRNDT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00733 472 Coils Coil 411 431 - -
Tsu06g00733 472 MobiDBLite consensus disorder prediction 72 103 - -
Tsu06g00733 472 PANTHER OS02G0659100 PROTEIN 1 471 - -
Tsu06g00733 472 PANTHER OS02G0659100 PROTEIN 1 471 - -
Tsu06g00733 472 Gene3D Classic Zinc Finger 197 307 - -
Tsu06g00733 472 MobiDBLite consensus disorder prediction 383 430 - -
Tsu06g00733 472 MobiDBLite consensus disorder prediction 1 38 - -
Tsu06g00733 472 MobiDBLite consensus disorder prediction 24 38 - -
Tsu06g00733 472 ProSitePatterns Zinc finger C2H2 type domain signature. 287 307 IPR013087 -
Tsu06g00733 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 227 IPR013087 -
Tsu06g00733 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 285 307 IPR013087 -
Tsu06g00733 472 MobiDBLite consensus disorder prediction 383 427 - -
Tsu06g00733 472 SUPERFAMILY beta-beta-alpha zinc fingers 199 307 IPR036236 -
Tsu06g00733 472 SMART c2h2final6 49 69 IPR013087 -
Tsu06g00733 472 SMART c2h2final6 285 307 IPR013087 -
Tsu06g00733 472 SMART c2h2final6 200 222 IPR013087 -
Tsu06g00733 472 MobiDBLite consensus disorder prediction 258 278 - -
Tsu06g00733 472 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
Tsu06g00733 472 Pfam C2H2-type zinc finger 284 309 - -
Tsu06g00733 472 Pfam C2H2-type zinc finger 200 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00733 Tsu-Chr6 6479984 6481402 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00733 106 350 C2H2 Transcription Factor Family AT1G02040 35.200 3.93e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu06g00733 zf-C2H2_6 1.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00733 - - ahf:112720137 611.298