Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00731 ATGAGATCACACATGATGAACCTACCAATTCCACCTAAACAAAACAATTCGCCGCCACCGCCCCCGCCAATGATTCAACTCAGCTTCGAAGCCGATTCGGgttcatcaccatcatcttcttcattttatgGTCTAAGAGAGAATCCGAAGCGAAGCTTCCGATTCACAGATCCCAATCATATTATCGACGCTGGCTCGATAATTCTCCAAGAAGACGGAGGAAGCGAAAGTGAGTCCTCCAAAAATCCAACCGGTAAACGATCCAAACGTGTCAAGAAAATTGATCCGATGAAAAACTCAATACAGACTAACGATTCTGTACTGAGTTCTTCTTCGGATATAACTACCGAAGAAGACATAGCTTTTTGTCTCATGATGATGTCTcgccacaacaacaacaacaattggAAAAcacaacatcaaaatcatcaatatcaagaacaacaaaatcatcattATGATCAATATCAAGAAGATCaacaagaagaggaagaacaatTCAACCAATACGTtcaagatgaagatgaagaagaagacgaagatgtcgaggaagaagaagaaagtgaagCTGAAtctgaggaagaagaagaagaagtgaaaCCGTTGAAGAAGGTACGAGGAAGATATAAATGTGACACGTGTAACAAAGTGTTTCGTTCATATCAAGCACTTGGTGGACATAGAGCGAGTCACAAGAAGAATATGAAATTACTTGCAGAAAATGGTGGTGATTCAATTTCAAACCACCATGACCACAAAAGTAAAATCGAAAACAACAATGTTGTTGTTAATCATAACAACAATGGCGAAAAGAGAATTCATGAGTGTCCAATTTGTTTTAGAGAATTTTCCTCTGGTCAAGCACTTGGTGGACATAAGAGAACACATGGTATTGGAATTGGAAATGGAATTGGATCATCTGCACCGGCATCAACACCGGCaccagcagcaacaacaacggCAACAACAGCCACGGTGGTTACAACAACTAATGTTCCAACAACAGCAATAATAAATGTTGAGGTTGTTAGAAGAAGTTCCGCGAATTTTGGAGAAAGTTTGATAGATCTAAATCTTCCTGCTGATATGGATGaagttgatggtgatgatgttaGCCAAATTGAAGGCTCTGCTGTTTCCGATGCTGAATTTGTCAAACCTTAA 1164 0.3196 MRSHMMNLPIPPKQNNSPPPPPPMIQLSFEADSGSSPSSSSFYGLRENPKRSFRFTDPNHIIDAGSIILQEDGGSESESSKNPTGKRSKRVKKIDPMKNSIQTNDSVLSSSSDITTEEDIAFCLMMMSRHNNNNNWKTQHQNHQYQEQQNHHYDQYQEDQQEEEEQFNQYVQDEDEEEDEDVEEEEESEAESEEEEEEVKPLKKVRGRYKCDTCNKVFRSYQALGGHRASHKKNMKLLAENGGDSISNHHDHKSKIENNNVVVNHNNNGEKRIHECPICFREFSSGQALGGHKRTHGIGIGNGIGSSAPASTPAPAATTTATTATVVTTTNVPTTAIINVEVVRRSSANFGESLIDLNLPADMDEVDGDDVSQIEGSAVSDAEFVKP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00731 387 Pfam C2H2-type zinc finger 208 233 - -
Tsu06g00731 387 Pfam C2H2-type zinc finger 274 296 - -
Tsu06g00731 387 MobiDBLite consensus disorder prediction 134 151 - -
Tsu06g00731 387 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 386 IPR044303 GO:0006355
Tsu06g00731 387 Coils Coil 146 198 - -
Tsu06g00731 387 Gene3D Classic Zinc Finger 206 296 - -
Tsu06g00731 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 236 IPR013087 -
Tsu06g00731 387 MobiDBLite consensus disorder prediction 12 26 - -
Tsu06g00731 387 ProSitePatterns Zinc finger C2H2 type domain signature. 276 296 IPR013087 -
Tsu06g00731 387 MobiDBLite consensus disorder prediction 29 46 - -
Tsu06g00731 387 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 386 - -
Tsu06g00731 387 SMART c2h2final6 209 231 IPR013087 -
Tsu06g00731 387 SMART c2h2final6 274 296 IPR013087 -
Tsu06g00731 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 296 IPR013087 -
Tsu06g00731 387 ProSitePatterns Zinc finger C2H2 type domain signature. 211 231 IPR013087 -
Tsu06g00731 387 MobiDBLite consensus disorder prediction 134 202 - -
Tsu06g00731 387 MobiDBLite consensus disorder prediction 1 113 - -
Tsu06g00731 387 SUPERFAMILY beta-beta-alpha zinc fingers 208 296 IPR036236 -
Tsu06g00731 387 MobiDBLite consensus disorder prediction 159 196 - -
Tsu06g00731 387 MobiDBLite consensus disorder prediction 97 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00731 Tsu-Chr6 6447282 6448473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00731 109 361 C2H2 Transcription Factor Family AT2G45120 34.783 4.89e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu06g00731 zf-C2H2_6 6.5e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00731 - - gmx:100780611 239.58