Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00695 ATGGGTGGGAGAAAGGTGAAACTTGCCTTTATCTCTAATGTTTCAAAAAGGAAGGATTCCTACAGGAAAAGAAAGAAGGGTATCATCAAAAAGATGAAGGAAATCAAGATTCTTTGTGATATTCCAGCATGTGCCATAATTTCAAATCCTTTTAATTCTTCTAAGACAGAGGTGTGGCCAGATCAAGAAGAAGCCAAGAAGGTGATTGAGAGGTATCAGAATTCATCTGAGATAGATGAAACCAAAAATTTGAATCAAGAGAGTTTCCTCGTGCAAAGTATTACCATAGCGAAGGAGAAACTCGAAAAGCAAAAACAAGAGAATCGTAAGAAGAAGTTGACCATTCGTATGATCGAgtatatgaaaaacaaaaatttgccCGATGATCTACCTGTTTCGGATTTGAAAGAgtttgataagctaattgaaaagCATCTGAAAATTATTGATGACAAGATTGTTGAGCTGAATGGATCCAATTAA 483 0.3313 MGGRKVKLAFISNVSKRKDSYRKRKKGIIKKMKEIKILCDIPACAIISNPFNSSKTEVWPDQEEAKKVIERYQNSSEIDETKNLNQESFLVQSITIAKEKLEKQKQENRKKKLTIRMIEYMKNKNLPDDLPVSDLKEFDKLIEKHLKIIDDKIVELNGSN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00695 160 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Tsu06g00695 160 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Tsu06g00695 160 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 156 - -
Tsu06g00695 160 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Tsu06g00695 160 PANTHER MADS BOX PROTEIN 3 156 - -
Tsu06g00695 160 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Tsu06g00695 160 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Tsu06g00695 160 Coils Coil 91 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00695 Tsu-Chr6 6003908 6004390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00695 4 153 Type I MADS-box Gene Family AT1G65300 35.762 2.04e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu06g00695 SRF-TF 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00695 - - gmx:100792290 162.54