Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00694 ATGAATATTGATAAACTGCGTGAGTTTGCGTCTGGTGATAACACAGTCACGAAGACATGCAACCATTTGTCATCCAATGttgattcttcatcatcatctactACCAAAAAATTTGGTAGTCATGCCCCTGGAATTAGGAAAGCAATGAAGATTTTAGAAGCTCAATTTGGTCACCCGCATGTGTCGTTGTTATCATCATCGTCATCAGCAAATGCTTTTGCTGCTTCTGATCATCCAGATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATTTTAGAAGCTCAATTTGGTCACCCGCATGTGTCGTTGTTATCATCATCGTCATCAGCAAATGCTTTTGCTGCTTCTGATCATCCAGATCTCCATGGAGGCTCATCACACTTACAAGAGCCGTTATCTCAGACGACCAATGTCGTTGCTGCAAATGGTGATGAGTTTGGTGACGGTaacaacaagaagaagatgacGATCCATAGCCTACCACATCCAAAATATGGACCGTACATTTGTTCGAAATGCAACATAGAATTTGCAACTTCACAGAATGCAATGACTAGGAAGAAAGTGAAACTTGCCTTTATGTCTAATGATTCAGCAAGGAAGGCAACTTATAAGAAAAGAGTGAAGGGTATCATGAAGAAGGTGAATGAACTCGCCATTCTTTGCGATATTCCAGCTTGTGCTATAATTTCGAATCCTTTTAATTCGAAAACAAACGTGTGGCCGAATCTAGAGGGAGCCAAGCAAGTAATCGAGAAGTATCTGAATTCATCTAAGATAGATGAAGCAAAAAATGTGAGCCAAGAGAGCTTTCTCTTGCAGAAGATTACTAAAGCTAAGGAGCAACTTGCAAAGCAACTGCAAGACAATCATGAGAAGGAGCTGACCATTCGTATGATTGGTTacatgaaaaacaaaacattgcCTGATGATTTATCTGTTTCAGATTTGAAAGATTTTGATAAGCAAATTaagaaaaatctgaatgagATTGATGACAAAATTGTTGAGCTCAAGTTATCTGATTAA 1104 0.3297 MNIDKLREFASGDNTVTKTCNHLSSNVDSSSSSTTKKFGSHAPGIRKAMKILEAQFGHPHVSLLSSSSSANAFAASDHPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKILEAQFGHPHVSLLSSSSSANAFAASDHPDLHGGSSHLQEPLSQTTNVVAANGDEFGDGNNKKKMTIHSLPHPKYGPYICSKCNIEFATSQNAMTRKKVKLAFMSNDSARKATYKKRVKGIMKKVNELAILCDIPACAIISNPFNSKTNVWPNLEGAKQVIEKYLNSSKIDEAKNVSQESFLLQKITKAKEQLAKQLQDNHEKELTIRMIGYMKNKTLPDDLSVSDLKDFDKQIKKNLNEIDDKIVELKLSD 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00694 367 Gene3D - 221 307 IPR036879 GO:0003677|GO:0046983
Tsu06g00694 367 Coils Coil 115 120 - -
Tsu06g00694 367 SUPERFAMILY SRF-like 209 290 IPR036879 GO:0003677|GO:0046983
Tsu06g00694 367 PRINTS MADS domain signature 211 231 IPR002100 GO:0003677|GO:0046983
Tsu06g00694 367 PRINTS MADS domain signature 231 246 IPR002100 GO:0003677|GO:0046983
Tsu06g00694 367 ProSiteProfiles MADS-box domain profile. 209 255 IPR002100 GO:0003677|GO:0046983
Tsu06g00694 367 CDD MADS_SRF_like 210 292 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu06g00694 367 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 219 258 IPR002100 GO:0003677|GO:0046983
Tsu06g00694 367 PANTHER MADS BOX PROTEIN 210 363 - -
Tsu06g00694 367 SMART madsneu2 209 268 IPR002100 GO:0003677|GO:0046983
Tsu06g00694 367 Coils Coil 298 318 - -
Tsu06g00694 367 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 210 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00694 Tsu-Chr6 5995356 5998664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00694 211 360 Type I MADS-box Gene Family AT1G65300 39.735 5.84e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu06g00694 SRF-TF 3.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00694 - - gmx:100792290 188.734