Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00693 ATGACTAGGAAGAAGTTGAAACTTGCCTTTCTGTCCAATGATTCAGCAAGGAAGGCAACTTATAAGAAAAGAGTGAAGGGTATCATGAAGAAGGTGAATGAACTCGCCATTCTTTGCGATATTCCAGCTTGTGCTATAATTTCGAATCCTTTTAATTCGAAAACAGACGTGTGGCCGAATCTAGAGGGAGCCAAGCAAGTAATCGAGAAGTATCAGAATTCATCTAAGATAGATGAAGCAAAAAATGTGAGCCAAGAGAGCTTTCTCTTGCAGAAGATTACTAAAGCTAGGGAGCAACTTGCAAAGCAAATGCAAGACAATCATGAGAAGGAGCTGACCATTCGTATGATTGGTTacatgaaaaacaaaacattgcCTGATGATTTATCTGTTTCAGATTTGAAAGATTTTGATAAGCAAATTAAGAAAAATCTGAATGAAATTGATGACAAAATTGTTGAGCTCAAGTTATCTGATTAA 480 0.3521 MTRKKLKLAFLSNDSARKATYKKRVKGIMKKVNELAILCDIPACAIISNPFNSKTDVWPNLEGAKQVIEKYQNSSKIDEAKNVSQESFLLQKITKAREQLAKQMQDNHEKELTIRMIGYMKNKTLPDDLSVSDLKDFDKQIKKNLNEIDDKIVELKLSD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00693 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 50 IPR002100 GO:0003677|GO:0046983
Tsu06g00693 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Tsu06g00693 159 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Tsu06g00693 159 Coils Coil 90 110 - -
Tsu06g00693 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu06g00693 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu06g00693 159 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
Tsu06g00693 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu06g00693 159 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Tsu06g00693 159 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu06g00693 159 PANTHER MADS BOX PROTEIN 2 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00693 Tsu-Chr6 5989342 5989821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00693 1 148 Type I MADS-box Gene Family AT3G05860 41.611 1.23e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu06g00693 SRF-TF 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00693 - - gmx:100792290 186.808