Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00642 ATGTCTTTGAGAGTTCCTCTTCATGGCCGAACTTACAGTTACGATGTGTTTTTGAGCTATCATGACAAAAACTTCCGTAAATCTTTTGCATCGGATCTCTATTCAGCTCTCACACAAGTTGGACTTGTTGTTTACATCAACCATCACAATCTTACAACAGGAGATCGCACAAATTTCTCAGCAATCGAATCTTCTAGAATTTCTATCATCATTTTCTCGAGTAATTTTGACGCTTCATCATGGTTTCTAGAAGAAATTGAGAAGATATTGGAGTGTCGTAGATCCACAGGGCAGGTGGTTGTGCCTGTTTTTTATGGTGTAGATGAATCTGATGTACGCCGTCAGGAAGGATGCTTTGGAAAAGTTACACAAAGGTACGAGTCAATGCGTTATACAGCTGCGCTTTTTGAAGCTACTAACATACCGCGAGGAAATCTTAAGGGGGATTACAGGAACGAAAGTGAATATATCAACAACATGGTGCAATATTTGACTCGTTTGATAGAAGACaaattcttttttgttgttaaacACCCAGTGGGAGTAGAATCTCGGATGCAAGATGTTATTCAACTATTGAACAAGGAACAACCAGGAAGTACCACAATTGTAGGGATATGGGGGATAGACGGGGTTGGCAAAACAACAATTGCAAAAGCCACTTATAATCAAATGGGTTGCAGTTTTGAGGGCCAGAGTTTCCTCGTAAGTGTTAATGAATTTTGGCAACAGAGAGATGGCCCAGTTTCTTTACAGCGACAAATTCTTTCAAACATCTACAAAACAACAAAGATACAGATAGATACAGTTGAATCAGGAAAGATGGTATTATGTGAAAAACTTCGCCGTAAGAGGATATTTCTTGTACTTGACAATGTGAATAAAATGGAACAGTTGAATGCTTTGTGTGGTAGTCGTGAATGGTTTGGTCCTGGAAGTAGAATAATTATCACAACAAGTGATAAACAGATACTGCGTAGGCTTCAAGTTGACCATGTATATAGAATGAAATATATGGACACTACTGAATCTCTTGAACTTTATAGTTGGCATGTATTCAAAATTCCGAATCCTTTGGAAAGTTACACTTGTCTTTGTAGAGATGTTGCTGAGTACTGTGGGGGATTGCCGCTAGCTCTTGTAGCCATTGGGACCTTTTTGTATGGTGCACCTCTAGCGGATTGGGAGATTATACTGGAAAACCTCAAAACCAATGGCAACTATGTCGTAATGGAGAAGATGAGGACACTTTTTTATGATTTAGATCATCATGCTAAAGAAATACTCCATAATGTAGCTACTATATTTATTGGGATGGATATACAAGAtgtaattcaaatattaaagtaCTCTGGGCCTTTCCTGCAACCTGGAATAAAAGTCCTTGTAGATAAAAGCCTTGTAACTATAAATAGCAAGAACAGGATTGGAATGCATACTTTGGTACGAGCACTGGGAAGAAATATCATAAGGCAACAGGGTACAGCTGAGACAAAGATGTACGATGTGTTCTTGAGTTTCAGAGGAGAAGACAGTCGCGCAAAATTCATTTCACATCTCTATCCCTCTCTTCAAAATGCTGGAATTTATGTTTTCAAAGACGATGATGGGATTCAACGAGGAGATCAGATCTCAGTCTCATTGTTGCAAGCAATCGGTCAGTCCAGAATTTCTATTGTTATTTTGTCTAGAAACTTTGCTAATTCAAAATGGTGTATGCTGGAGTTGGAGAGAATTGTGGAAATCGGAAGTACCAATGGTATGGTGGTTGTCCCAGTGTTCTATGAGGTAGATCCCTCAGAAGTACGTCATCAGACAGGAGAGTTTGGAAAAGCTTTCGATTCTcttatatcaacaaaaaaagtgGATGAATACACTAAGCGGAATTGGAAAACAGCACTCCATGAAGTTGGTGGCAGAGCTGGGGTTGTCATCATGAATTCTAGGAACGAAAGTGAGGATATCAAGAAAATAGTTGAACTTGTTACTCGTTTGCTAGACAAGACAGAACTGTTTGTAGCTGACCATCCAGTGGGAGTAGAATCACGTGTACAAGAAGTTATTCAACTACTGAACAGCCAAAAATCAAAAGATCCTCTACTACTAGGGATATGGGGCATGGGAGGGATCGGAAAGACAACCATTGCTAAAGCCGTTTATAATAAAATTCGTCATGATTTTGAGGCAAAGAGTTTCCTGTTGAATGTCCGGGAGGTTTGGAAACTAGATAATGACAAAGTTTCTTTACAGCAACGGCTTCTTTCAGACATCTACAAAACTACAAAGATAAAGATAGATACAGTTGAATCAGGAAAAATTATATTGCAGGAAAAACTTCGCAAGAAAAGGATATTTGTTGTAATGGATGATGTGAATAAATTAGATCAGTTAAATGCTTTGTGTGGAAATCGAAAATGGTTTGGCGAGGGAAGTAGAATAATCATCACGACAAGAGATGATGATTTGCTTAGTAGGCTTGAAGTTGACCACATATACAGAATGAAGGAAATGGATGACAGTGAATCTCTAGAGCTTTTTAATTGGCATGCATTCAAACAACCAATTCCTGGGGAAGGTTTCACTAGCCTTTCTAGAGATGTTGTTAAATACTCTGGAGGCCTGCCCCTAGCTCTTCAAGTCATTGGATCCTTTTTGTTGACTAAGAGAAGGGAGAGAGAGTGGTATAGTGTACTGGAGAAACTCAAACTGATTCCTAATGATGAAGTGTTGGAGAAGCTCAAAATAAGTTTTGATGGTTTAAGTGATGATGATATGAAAGATATATTCCTTGATATTGCTTTTTTCTTTATTGGTATGGACCGGGAAGACATAACTGAGATATTAAAAGACTGCGGGCATTTTCCAGAAATTGGAATAAGTGTCCTCTTACAACAAAGCCTTGTAACTGTTGATAGGAAAAACAAGATCGGAATGCATGATTTGCTACGAGACATGGGAAGAGAGATCGTCCGCAAGAAATCTAAAGTGGGGGGCAAGGAGCCAAGTAGATTATGGCGTTATGAGGATGTTCATGAGTTGTCAAAAGATACTATTTCTCTATATGTTAAGGGACTGACTTTAAAGATGTCAAGACTGGAGGCACCAATTTGTTTACAAACCAAAGAATTTGAGAAGATGAACAGGCTTAAATTGCTTCAATTTGCTGGCATACAACTTGGTGGAGATTACAAATATCTTTCAAAAGATCTCAGGTGGCTTTGTTGGCATGGATTCCCTTTAAAATATACACCAAAAGACCTTAATCAAGAAAGTTTAGTTGCTCTTGACTTACAATATTCCAATCTAGATAGAGTGTGGAGGAAGGATCAGTTGCTGGTGAAGCTGAAAATTCTTAATCTTAGTCATTCTCACAACTTGAGACATACCCCAAACTTTTCAAATTTGCCAAATCTTGAAAAGTTAATACTTAAGGATTGTCCAAGTTTGTCTTCAGTTTCTTCTAGTATAGGACGTCTCAGAAAAATTCTGTTAATAAATTTGAAAGATTGTACAGGCCTTTGCGAACTTCCGAGGAGCATCTATAAGTTAGACTCGCTCAAAACTCTCATTCTGTCTGGATGTACAAAAATTGACAAGCTGGAAGAGGATATAGAACAAATGAAATCTTTAACCACCCTGGTTGCGGATAGCACTGCTATAACAAGAGTTCCCTTTGCAGTAGTAAGATCAAAAAGCCTCGCATATATTTCCCTCTGTGGTTATGAAGGATTTGCGCGTAAAGTATTTCCTTCTATTATCCAGTCTTGGTTGTCGCCAACAAATAATGTTCTATCTCTAGTTCAAATATCTGCAGGAACTCCATGTCTTGATTTCACTGAAGAACAAAATAAGAGTTTCTATTGTCTACCATCCACTTTTGAAGACCTTCAGGATCTTCAACGTCTTTGGTTGAAATGCGATTCAGAAGCCCAACTAAATCAAACTGTGGCAAGTATTTTGTATAGCTTTAACACTCAAAATTCTGAGGGACTCTCTAATATCGGGACTACAGCATCAATTCTTTGCCGCAGTCAAGTTGGTATTTCAAGCTCAAAAAATTCCTTGACATCCCTTTTGATTCAAATGGGAATGAGCTGCAATGTCACTGACATTCTCAAAGATAATATTTTGCAGAAAATTCCTCCCACTGGGTCTGGTTTACTCCCTGGTGACAACTCTCCCAACTGGCTAACCTTCAATAGCAACAATTCTTCTGTAACTTTTGAAGTACCTGAAGTAGATGGGCGTAATTTGAAGACAATCATGTGCATTGTCTATTCTTCTTCTGCTGACAATGCAACAACAGAAGGTTTTAAAGTTGTGTTGGTAATAAATTACACAAAGAACACCATTCAGGTCTACAAGAGAGATGGATTACTAGCCACCTCTGATGAGGAGGAGTGGCAGAGGGTAATATCAAATATAGAACCCGGAAACAAAATTAAGGTAGTTGTTGGTTTTACAAATGAATTCATTGTGAAGAAGACAacaatttattttgtatatgatGAATCAAATGAGGAACAGACGAATCACTACCATGAGACAGACGAGAATGGCATCGCTTTGAGTGGTGATGGAAATTCAGGAAGTAACTATTTTGATTGGGATTATGAAGTTGCGGATGAAAAGAATTTGATTATCATGAAGCAAAAAAGGAGATTGGAGGTACTAACACGAGTAAGTGATGAANATAATTTGGAATGGGTAAATGTAAACTTTGTAAGTGATATTTGA 4737 0.377 MSLRVPLHGRTYSYDVFLSYHDKNFRKSFASDLYSALTQVGLVVYINHHNLTTGDRTNFSAIESSRISIIIFSSNFDASSWFLEEIEKILECRRSTGQVVVPVFYGVDESDVRRQEGCFGKVTQRYESMRYTAALFEATNIPRGNLKGDYRNESEYINNMVQYLTRLIEDKFFFVVKHPVGVESRMQDVIQLLNKEQPGSTTIVGIWGIDGVGKTTIAKATYNQMGCSFEGQSFLVSVNEFWQQRDGPVSLQRQILSNIYKTTKIQIDTVESGKMVLCEKLRRKRIFLVLDNVNKMEQLNALCGSREWFGPGSRIIITTSDKQILRRLQVDHVYRMKYMDTTESLELYSWHVFKIPNPLESYTCLCRDVAEYCGGLPLALVAIGTFLYGAPLADWEIILENLKTNGNYVVMEKMRTLFYDLDHHAKEILHNVATIFIGMDIQDVIQILKYSGPFLQPGIKVLVDKSLVTINSKNRIGMHTLVRALGRNIIRQQGTAETKMYDVFLSFRGEDSRAKFISHLYPSLQNAGIYVFKDDDGIQRGDQISVSLLQAIGQSRISIVILSRNFANSKWCMLELERIVEIGSTNGMVVVPVFYEVDPSEVRHQTGEFGKAFDSLISTKKVDEYTKRNWKTALHEVGGRAGVVIMNSRNESEDIKKIVELVTRLLDKTELFVADHPVGVESRVQEVIQLLNSQKSKDPLLLGIWGMGGIGKTTIAKAVYNKIRHDFEAKSFLLNVREVWKLDNDKVSLQQRLLSDIYKTTKIKIDTVESGKIILQEKLRKKRIFVVMDDVNKLDQLNALCGNRKWFGEGSRIIITTRDDDLLSRLEVDHIYRMKEMDDSESLELFNWHAFKQPIPGEGFTSLSRDVVKYSGGLPLALQVIGSFLLTKRREREWYSVLEKLKLIPNDEVLEKLKISFDGLSDDDMKDIFLDIAFFFIGMDREDITEILKDCGHFPEIGISVLLQQSLVTVDRKNKIGMHDLLRDMGREIVRKKSKVGGKEPSRLWRYEDVHELSKDTISLYVKGLTLKMSRLEAPICLQTKEFEKMNRLKLLQFAGIQLGGDYKYLSKDLRWLCWHGFPLKYTPKDLNQESLVALDLQYSNLDRVWRKDQLLVKLKILNLSHSHNLRHTPNFSNLPNLEKLILKDCPSLSSVSSSIGRLRKILLINLKDCTGLCELPRSIYKLDSLKTLILSGCTKIDKLEEDIEQMKSLTTLVADSTAITRVPFAVVRSKSLAYISLCGYEGFARKVFPSIIQSWLSPTNNVLSLVQISAGTPCLDFTEEQNKSFYCLPSTFEDLQDLQRLWLKCDSEAQLNQTVASILYSFNTQNSEGLSNIGTTASILCRSQVGISSSKNSLTSLLIQMGMSCNVTDILKDNILQKIPPTGSGLLPGDNSPNWLTFNSNNSSVTFEVPEVDGRNLKTIMCIVYSSSADNATTEGFKVVLVINYTKNTIQVYKRDGLLATSDEEEWQRVISNIEPGNKIKVVVGFTNEFIVKKTTIYFVYDESNEEQTNHYHETDENGIALSGDGNSGSNYFDWDYEVADEKNLIIMKQKRRLEVLTRVSDEXNLEWVNVNFVSDI 1578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00642 1578 Gene3D - 170 333 IPR027417 -
Tsu06g00642 1578 SUPERFAMILY L domain-like 1036 1381 - -
Tsu06g00642 1578 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 496 IPR044974 GO:0006952
Tsu06g00642 1578 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 509 1501 IPR044974 GO:0006952
Tsu06g00642 1578 PRINTS Disease resistance protein signature 1181 1197 - -
Tsu06g00642 1578 PRINTS Disease resistance protein signature 778 792 - -
Tsu06g00642 1578 PRINTS Disease resistance protein signature 701 716 - -
Tsu06g00642 1578 PRINTS Disease resistance protein signature 871 885 - -
Tsu06g00642 1578 SUPERFAMILY "Winged helix" DNA-binding domain 907 1013 IPR036390 -
Tsu06g00642 1578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 429 IPR027417 -
Tsu06g00642 1578 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 128 IPR035897 -
Tsu06g00642 1578 ProSiteProfiles TIR domain profile. 12 168 IPR000157 GO:0007165
Tsu06g00642 1578 SUPERFAMILY Toll/Interleukin receptor TIR domain 497 642 IPR035897 -
Tsu06g00642 1578 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 23 496 - -
Tsu06g00642 1578 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 509 1501 - -
Tsu06g00642 1578 SMART till_3 13 141 IPR000157 GO:0007165
Tsu06g00642 1578 SMART till_3 500 640 IPR000157 GO:0007165
Tsu06g00642 1578 Gene3D Ribonuclease Inhibitor 1021 1263 IPR032675 -
Tsu06g00642 1578 Pfam NB-ARC domain 681 902 IPR002182 GO:0043531
Tsu06g00642 1578 Pfam NB-ARC domain 183 407 IPR002182 GO:0043531
Tsu06g00642 1578 Gene3D - 498 664 IPR035897 -
Tsu06g00642 1578 ProSiteProfiles TIR domain profile. 499 666 IPR000157 GO:0007165
Tsu06g00642 1578 Pfam TIR domain 501 662 IPR000157 GO:0007165
Tsu06g00642 1578 Pfam TIR domain 14 130 IPR000157 GO:0007165
Tsu06g00642 1578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 664 932 IPR027417 -
Tsu06g00642 1578 Gene3D - 339 422 IPR042197 -
Tsu06g00642 1578 Gene3D - 836 921 IPR042197 -
Tsu06g00642 1578 Gene3D - 665 832 IPR027417 -
Tsu06g00642 1578 SMART AAA_5 200 343 IPR003593 -
Tsu06g00642 1578 SMART AAA_5 698 841 IPR003593 -
Tsu06g00642 1578 CDD AAA 678 830 - -
Tsu06g00642 1578 Gene3D - 8 169 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00642 Tsu-Chr6 5592389 5613961 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00642 6 493 WRKY Transcription Factor Family AT4G12020 26.667 5.08e-40 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00642 - - mtr:MTR_7g088950 1834.69