Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00629 atgtcttcttcttctccctTGAGCTCCTCTTCTCAAAGAAAGATCTACCACGAGGTGTTCTTGAGCTTCAGAGGGGAAGACTGTCGCGTGAAATTCATTTCACATCTTCATTCGAATGAAAGCGAGGATATCAAGAAAATAGTTGAACTTGTTACTCGTTTGCTAGACATGCCAGCTTTTTTTGTTGCTGACTATCCCGTGGGAGTAGAATCACGTGCACAATACATTTTTCAACTATtgcaaaaccaaaaatcaaaagaaCCTCTACTGCTAGGGATATGGGGCATGGGGGGGATTGGGAAAACAACCCTTGCTAAAGCTGTTTACAATAAAATTCGTCATGATTTTGATGGAAAGAGCTTCTTGCTCAATGTCGGGAAAGTTTGGAAACTCGATAATGGCAAAGTTTCTTTACAGCAACAACTTCTTTCTAACATCTACAAAACTACAACGATAAAGATAGACACAGTTGAATCCGGAAAAACTATATTACCGACAAGACTTTGTGATAAAAGGATATTTCTTGTAATTGATGATGTGGATGAATTGGATCAATTGAAAGCTCTGTGTGGAAATCGAAATTGGTTTGGTGAGGGAAGTATAATAATCATCACAACAAGAGATGATGATTTACTTGGGGGGATTGAAGTTAACCATGTACACAGAATAATGGAAATGGATGAAAATGAATCTCTAGAACTTTTTAATTGGCACGCATTCAAGCAACCAATTCCTAGAGAAGGTTTTACTAACCTTTCTAGAGATGTTGTTAAGTACTCTGGAGGATTGCCGCTAGCTCTTGAAGTCATTGGGTCCCTTTTGTTTACTCAAACAGAGGAAGCAGTGTGGAAGGATGTACTGGAGAAACTTAAAGTGATTCCCAATGATAAAGTTTCAGAGCGGCTCAGAATAAGTTATGATGGTTTAAGTGATGAGGATGTGAAAGATATATTCCTTGACATTGCTTTTTTCTTTATTGGCATGGATCGGGAAGATGTAACTGAGATATTAAAAGACTGTGGGCATTTTCCAGACTTTGGAATAAATGTCCTCGTACAACGAAGCCTTATCACTGTTGATAGGAAAAACAAGATTGGAATGCATGATTTGCTACGAGACATGGGAAGAGACATAAAAGAGGGGGGGAAGGAGCCAAGTAGATTATGGGGTTACAAGGATGTGCTTGATGCGTTGTCAAAAGATACCTTAATAAATTTGAAAGATTGTAAAGGCCTTCGTGAACTTCCAAGTAGCATCTATGAGTTAGACTCGCTGAAAACTCTCATTCTATCTGGATGTACAATTGATTTTGGGTTGGGAAAGGATATGGAACAAATGAAATCTTTAACCACCTTGCTTTTGGATACCACTGATATAACAAAGACAAAGACGTATGATGTGTTCTTGAGTTCTAGATTCGAAGACACTCGCACAACATTCGTTTCACATCTGTATTGCTATCTTCAAAAGGCTGGGATTTATGTTTTCGAAGAGATGCATTGGATTCCGAGAGGACATCGCATCTCAGTCCCATATTTGCAAGCAATTGGTCAGTGTAGAGTTTGTATTGTtgttttgtctaaaaaatatgcTAATACACAATGGATTATGCTGGAGTTGGAGAGAATTGTGGAAATAAGTAGAACCACGGGTATGATTGTTGTACCAGTGTTCTATGAGGTAGATCCCTCAGAAGTACGTCGTCAGACAGGAGAGTTTGGACAAAatttcaattcttttttatcaagAATACCAGTGGATGAATACACAAAGCAGAATTGGAAAATAGCACTCCATAAAGTTAGTGTCAGACCAGGGTTTGTCATTAACAATTCCAgGGATGCAAGGGAGGGTATCCAGAATATTGTTCAACGAGTCACCCGTTTCCTACAAGAAAATCCAGTGGGAAtaaaatcaaaggtacaagAAAAGGAAGGAGAGAATCAATCTGAGCGTAGAGGTTATTCACCTCCTTGTTCGGAAAATGATGAAGACAACCAAGATAGTACCGACAGTGAATCATCTCATGCTTCATCTCCTCCTAAGGAAACTATGGATGAAACAGAATTTCTGAATGCCATACAAGATGATCATGAAGTCCCTCCTACTGGTATTCAAATTTCGAATGTTGCGATTCCTTCCAATATTCCTATTGATGATGAGCTTCAAACTAGATTAGCTGCTTTCAACATTGACTTAGAAAACAATGCTACTGCTGCGATAGAGAGTTTCCTATCATCACTTGGTTTTTTGAGTGACCCAATAGTTTCAACTTCACAAAGTGGTGCCTCATCTCAACTAACCACTACTGCTGAGTCTCTGGTTCAAGAACTTCGAAGTTTAGCTTTTGATGGACCTCCATTTGATAGCCTCTCTTCGATACTGGCTTTGGATCAGTCTCTTGACTCATTCAAGCAAAAACTTAGAATTCATCAACACCTTCTGCTTGCTTCACAACTTGAAGGCTTTACCACAGTCTTGACTAATCTTGAAGATATTGTAAAGACTTATCGTGGTTATGAGCAAGAGAGGACACTCAAAGAACATTCTGAATCTGAAGTTGCAAAGTTCGTAATTGCTATGAATGAATCCAAAAACAAGTTTAATAAGTATCAAAGTCTTATAAGTGACTGTGAGAATCGTGACAAAGAGATTATTACAAAAGTTGAGGCATTGAAGAGAGAAATCAAAGGGTTGGAGATGGAGCAGGAAAATTTGAATGTTAAAAAAGAATCTGCTAAAGAAATGATGAATTCTGAAAAGAGAGTCTTACATTCACAAGCGGCCAGTCTAACTGCCCATCAATCTCAACTTCGAGCCTCACGAGACAAGCTTTCTACTCTAGATAATAACCTTCAGCAATGTAAAGCTACTTATGCTAGGTTTAAGGAGCATCCTCCATTTTAG 2907 0.3746 MSSSSPLSSSSQRKIYHEVFLSFRGEDCRVKFISHLHSNESEDIKKIVELVTRLLDMPAFFVADYPVGVESRAQYIFQLLQNQKSKEPLLLGIWGMGGIGKTTLAKAVYNKIRHDFDGKSFLLNVGKVWKLDNGKVSLQQQLLSNIYKTTTIKIDTVESGKTILPTRLCDKRIFLVIDDVDELDQLKALCGNRNWFGEGSIIIITTRDDDLLGGIEVNHVHRIMEMDENESLELFNWHAFKQPIPREGFTNLSRDVVKYSGGLPLALEVIGSLLFTQTEEAVWKDVLEKLKVIPNDKVSERLRISYDGLSDEDVKDIFLDIAFFFIGMDREDVTEILKDCGHFPDFGINVLVQRSLITVDRKNKIGMHDLLRDMGRDIKEGGKEPSRLWGYKDVLDALSKDTLINLKDCKGLRELPSSIYELDSLKTLILSGCTIDFGLGKDMEQMKSLTTLLLDTTDITKTKTYDVFLSSRFEDTRTTFVSHLYCYLQKAGIYVFEEMHWIPRGHRISVPYLQAIGQCRVCIVVLSKKYANTQWIMLELERIVEISRTTGMIVVPVFYEVDPSEVRRQTGEFGQNFNSFLSRIPVDEYTKQNWKIALHKVSVRPGFVINNSRDAREGIQNIVQRVTRFLQENPVGIKSKVQEKEGENQSERRGYSPPCSENDEDNQDSTDSESSHASSPPKETMDETEFLNAIQDDHEVPPTGIQISNVAIPSNIPIDDELQTRLAAFNIDLENNATAAIESFLSSLGFLSDPIVSTSQSGASSQLTTTAESLVQELRSLAFDGPPFDSLSSILALDQSLDSFKQKLRIHQHLLLASQLEGFTTVLTNLEDIVKTYRGYEQERTLKEHSESEVAKFVIAMNESKNKFNKYQSLISDCENRDKEIITKVEALKREIKGLEMEQENLNVKKESAKEMMNSEKRVLHSQAASLTAHQSQLRASRDKLSTLDNNLQQCKATYARFKEHPPF 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00629 968 Pfam TIR domain 465 640 IPR000157 GO:0007165
Tsu06g00629 968 Coils Coil 938 958 - -
Tsu06g00629 968 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 400 461 IPR044974 GO:0006952
Tsu06g00629 968 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 474 639 IPR044974 GO:0006952
Tsu06g00629 968 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 400 IPR044974 GO:0006952
Tsu06g00629 968 Gene3D - 225 310 IPR042197 -
Tsu06g00629 968 SUPERFAMILY Toll/Interleukin receptor TIR domain 460 602 IPR035897 -
Tsu06g00629 968 MobiDBLite consensus disorder prediction 637 686 - -
Tsu06g00629 968 SUPERFAMILY "Winged helix" DNA-binding domain 296 398 IPR036390 -
Tsu06g00629 968 Gene3D - 464 637 IPR035897 -
Tsu06g00629 968 Gene3D Ribonuclease Inhibitor 377 463 IPR032675 -
Tsu06g00629 968 SUPERFAMILY L domain-like 397 461 - -
Tsu06g00629 968 Pfam NB-ARC domain 75 291 IPR002182 GO:0043531
Tsu06g00629 968 ProSiteProfiles TIR domain profile. 463 630 IPR000157 GO:0007165
Tsu06g00629 968 SMART till_3 464 604 IPR000157 GO:0007165
Tsu06g00629 968 Coils Coil 861 916 - -
Tsu06g00629 968 Gene3D - 44 220 IPR027417 -
Tsu06g00629 968 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 400 461 - -
Tsu06g00629 968 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 474 639 - -
Tsu06g00629 968 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 26 400 - -
Tsu06g00629 968 PRINTS Disease resistance protein signature 90 105 - -
Tsu06g00629 968 PRINTS Disease resistance protein signature 167 181 - -
Tsu06g00629 968 PRINTS Disease resistance protein signature 260 274 - -
Tsu06g00629 968 PRINTS Disease resistance protein signature 420 436 - -
Tsu06g00629 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 321 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00629 Tsu-Chr6 5478940 5493665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00629 67 389 WRKY Transcription Factor Family AT5G45050 34.743 4.65e-49 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00629 - - mtr:MTR_7g088950 516.538