LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu06g00624	ATGACAGTATCCTTTGATTTCAAATACGATGTATTCTTGGGTTATTTTACCAATAACAATGGAACCACCACCAATTCATTTGTTAATCATCTCTATGGAGGTTTAGTTAGCAAAGGAATCAACACCTTCATCAAAGAAAACGATGAAATCAGAGCTTGcattgaagaaattgaaagttCAAGAATGTCAATTGTTGTGCTATGTGAAAACTATGCATCTTCTACTTCATGCCTTGATGAACTTGTCAAGATTACTCAATATATTGACAACAAAAGTAGAAATGTAGCTGCAATTTTCTACAAAGTTGAACCGTCGGATATTCGGAAACAAAAACATTCTTATGAAGTAGCCATGGCTGAACATGAAAAGATATATGGGAAAGAGTCAGAGATGATTAAGACATGGAGGAATGCTTTGACTAGAGTTTGTGATCTAAGTGGAGTACATTGCAAAGATGATGTGTATGAATCTGAGCTCATAGAGAAGATTGTTAAAGACACATTGACTAAAGTGGCTCCTGCACCTGTACAAATGAACCACATAGTTGGACTTGATACTTGTTTTGAGGATGTGAAATCAGTTTTAGATATTGAGTCTAAGGATACCGTTCGAGTGATGGGAATTTACGGAGCTGGTGGAATAGGAAAAACCACATTTGCAGCTTATTTATATGACAAGATTAGGCACCTTTTTGAAGCAtcaacttttcttcttcatgtCAGAGAAGAATCAAACAAAGGCATCAAAGGCCTAGAAGATCTGCAAAAGAAACTTTTATCTCAGTTGGGAAGTGTTGAAATCAAACGCAGGCTTGGCAAGAGAAGAGTTCTTCTAGTTTTGGATGACATTGATGACAAAGGGAATTTGAACTTGCTGGTTGGAGGACGAGATTGGTTTGGTTCTGGTAGTAGGATCATAATAACAACAAGGAATGAAACTTTGCTAGATAGTCATGACATTgaaattgataaatataaaatggagGTGCTAACTGATCGCAACTCGCTAGAACTCTTTTGTTGGAATGCCTTTGATAATAACAGACCTGCAGAAAACTTTGAAAATATGTCTATGCGTGCAGCGAACTATGCAAATTGTATACCGTTGGCTTTATGTGTAATAGGTTCAAATTTGAAGGgtaaaaacatagaaaaatggGAATGTGAAATGGGAAAATATAAGAAGGTTCCACATGCTGATATTCAAGGTGTACTAGAAATAAGCTACTATAGTTTATCTGaattagagagaaaaatatttttggactGTGCTTGCTTCTTCAAAGGTGAAAAATGGGTATATGTTGAAAGGATATTAAAGGGTTGTAATTACTCCCCAAGTTTAAGAGTGTTTGCTTCTAAATGTTTAATGACTATCGATGAAAATGGCTGTTTGATGATGCATAGTCTAATTCAAGAGATGGGTAGAGAAGTTGTTAGAAAGGAGTCTCCATTAATCCCTGGTAACCGCAGCAGGTTATGGTATCATAAAGACATTCTTCAAGTACTCGAAGAAAATTCAgGAAGCCGAAATATTGAAGGAATAATGTTTCATCCTCCTACACATGAGGTAGTTGATCAATGGACTAATACTTCTTTCGAAAAGATGAAGAATCTCAAAATTCTTATTGTTAGGAATGCAACATTTTCAACAGGACCAAGTAGTTTACCGAATAGTTTACGGCTACTTGACTGGATGGGGTTCCCATCAAAGTCATTTCCACCTGATTTTTATCCTGAGAAAATTGTTgatttcaaattatcacataGTTCTCTGATATTGGCAAATCCACTTAAGACATTTGAAGATTTGACATTCATGAATCTCTCCCATTGTCAATCGATAACTCAAATGCCTGATCTGTCAGGAGCAAAAAATTTAAGAGTATTCACAATTGACAGATGCCATAAATTGGAAGGGTTTCATAAATCCTTTGGATTATATATGTCCAAACTTGTGTATTTAAGTGCATCAGAATGCACCATGCTCAGAAGTTTTGTGCCAAGAATGTATTTTCCATCCCTTGAAGTACTTTCGTTTAACTTCTGCAAAAGGCTCGAACACTTCCCAGATGTAATGCGGAAGATGGATAAGCCGTTAAAGATTCACATGATAAATACTGGTATTAAAGAGTTCCCAGAGTCCATTGATAAACTTACAGGGCTTGAATATGCAGACATGTCAACCTGTGAGCGACTCATAAATCTATCAAGAGGGTTTTTATTGTTGCCGAAACTTACCACAGTAAAAGTTGATGGATGTTCTCTGCTTCGAGAATCATTTAGAAGGTTCAAAGAGAGCCATTCAATAGCAAATGGCTGCTCAAATTTAAAGGAGCTGTGTTTCAGCAAGGCTAATCTATCATGTGAAGATCTTTACATGATTCTTGCAATTTTTCCGAAATTGGAATATTTGAATGTGTCGCACAATGGTTTTGTCTCCCTCCCAGAATGCATCAAAGGATCTTCGCAGTTGAAAAGACTTGATATAAGTTTTTGCAGGAATCTTATGGACATTCCACAACTTCCATCAAGTATTCAGAAAGTAGATGCAAGATACTGTCATTCCTTAATTCCAAAAGCATCAAGCACGCTATGGTCCAAGGTTTGTGATGAGAAGCAAAGAATACAAGTAGTGATGCCTAAAACAGAAATTCCAAATTGGTTTGGTCGTGTTGGCAGTGAAGATATTCCTGTTTTCTGGGCTCGCCGGAACTTCCCAGTCATTGCATTAGCAGTCGAGTTTGGTGAAATCAAAGAGAATGATGAAATAAATATGGACACTTTCACCTCAGAACTCTTTCCTGGAATGGCGTCAGATAAGTCTTCTCACTTTGTTGGTCTGCATTTGTTTGTAGAGGGACAAGAAATATGTCGCAAAGATTACGATTACTGCATTGTCGGCGAACATCATGTGTTAATGTGTGATCTTAGGACTTTGTTTAATGATGAAGAGTGGAAGGACCTTGATGCATCTCTTGGAGATGAGTGGAAGAAAATTCAGGTTCAATTTGAATCACCATTGATTGTTAATCATTGGAGAGTTTATGtgtacaaacaaaaaacaaaaaccgaTGATATCCAATTCAGTTTTCCCTATTCAACAGACTATGTACCAAGTTTGGTTCCAAAAAAATCTCTTAACcagaaaataaaacatatacaAAGTCTTGATCTCGTAGAAGCATTTGTCCAGTATTTAAATACTTTCAGATCAGAACAATCTGCCATTGTGGCAAACGAACTATTGAGATGGTGTAGGAACACTAGAGGTGGACCTCCTTCAGCATGTGTCTATGAGGCAAGTTTAATGCAAGAACACGAAGACAGTGTGTGGAATGCGGGGCAGATTTTGGAGATGTTGATGGGGAGTGTGGCAAATCATATTTCCGAAACAAAAGTTCAAAGTGCATACCAATTGGTGGTAGAATTATTGACAACAAGGGCACAACATGTGAAGGAAAAAGGCCATGAGGTTTTGCACATCAATATGAGTATGCCAATTATACTAGAGGAATGTGAATGTCACCGTTTTATAGGTTTGTCATCTCAATTTGGATCCTCTTCAACTGTCCTAACTCTGCAACAGAAAAAGACACAAATGGGACAACAGAGAGAGGCTCCGAGCCGTTGCTATTGGGGAAGTGTTGAGTTAGAAGAAGGAGATCCACTTGTGTGGAGAATTCGGAAAGGCAAAGAATCCATGATGAGGGAGAGGGTAAGCAATATTGTTGTTCTATTGAAATGCCAACATTGTTCTTTAGTGAAAGCTTCAAGTTCTAGCAATGTAGAGTCTTTGGAGGAAGATTACAAGGATCCTGAAGTGGAAGATTTATTGAAGAGGGTTGAAAAAGATGCAATGAGATTGAATAAATCTCAAGGGAAGCTTAAGGCATATATAGTTCAAATGGATGTAACAGTTTGTAACAGATATCTGATGGAAATGACAATCATTAGAGGACAAGAAATATTGGGAAGGTTTGGATCTAATTTCAAAAAGACGCCTTATGGAAAGTTAAGGATGGAGATTAATGCTAAGAGTAGTAATATTACTATGCAACATGAGTTGAAGGGTGAGAGTCAAGACACTAATAGTAATCAGAATCAGATGATTTGGACAAAGAGTCTTCTCAGGTGGATTGGACTCTCATAA	4152	0.3603	MTVSFDFKYDVFLGYFTNNNGTTTNSFVNHLYGGLVSKGINTFIKENDEIRACIEEIESSRMSIVVLCENYASSTSCLDELVKITQYIDNKSRNVAAIFYKVEPSDIRKQKHSYEVAMAEHEKIYGKESEMIKTWRNALTRVCDLSGVHCKDDVYESELIEKIVKDTLTKVAPAPVQMNHIVGLDTCFEDVKSVLDIESKDTVRVMGIYGAGGIGKTTFAAYLYDKIRHLFEASTFLLHVREESNKGIKGLEDLQKKLLSQLGSVEIKRRLGKRRVLLVLDDIDDKGNLNLLVGGRDWFGSGSRIIITTRNETLLDSHDIEIDKYKMEVLTDRNSLELFCWNAFDNNRPAENFENMSMRAANYANCIPLALCVIGSNLKGKNIEKWECEMGKYKKVPHADIQGVLEISYYSLSELERKIFLDCACFFKGEKWVYVERILKGCNYSPSLRVFASKCLMTIDENGCLMMHSLIQEMGREVVRKESPLIPGNRSRLWYHKDILQVLEENSGSRNIEGIMFHPPTHEVVDQWTNTSFEKMKNLKILIVRNATFSTGPSSLPNSLRLLDWMGFPSKSFPPDFYPEKIVDFKLSHSSLILANPLKTFEDLTFMNLSHCQSITQMPDLSGAKNLRVFTIDRCHKLEGFHKSFGLYMSKLVYLSASECTMLRSFVPRMYFPSLEVLSFNFCKRLEHFPDVMRKMDKPLKIHMINTGIKEFPESIDKLTGLEYADMSTCERLINLSRGFLLLPKLTTVKVDGCSLLRESFRRFKESHSIANGCSNLKELCFSKANLSCEDLYMILAIFPKLEYLNVSHNGFVSLPECIKGSSQLKRLDISFCRNLMDIPQLPSSIQKVDARYCHSLIPKASSTLWSKVCDEKQRIQVVMPKTEIPNWFGRVGSEDIPVFWARRNFPVIALAVEFGEIKENDEINMDTFTSELFPGMASDKSSHFVGLHLFVEGQEICRKDYDYCIVGEHHVLMCDLRTLFNDEEWKDLDASLGDEWKKIQVQFESPLIVNHWRVYVYKQKTKTDDIQFSFPYSTDYVPSLVPKKSLNQKIKHIQSLDLVEAFVQYLNTFRSEQSAIVANELLRWCRNTRGGPPSACVYEASLMQEHEDSVWNAGQILEMLMGSVANHISETKVQSAYQLVVELLTTRAQHVKEKGHEVLHINMSMPIILEECECHRFIGLSSQFGSSSTVLTLQQKKTQMGQQREAPSRCYWGSVELEEGDPLVWRIRKGKESMMRERVSNIVVLLKCQHCSLVKASSSSNVESLEEDYKDPEVEDLLKRVEKDAMRLNKSQGKLKAYIVQMDVTVCNRYLMEMTIIRGQEILGRFGSNFKKTPYGKLRMEINAKSSNITMQHELKGESQDTNSNQNQMIWTKSLLRWIGLS	1383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu06g00624	1383	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	147	IPR035897	-
	Tsu06g00624	1383	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	17	1080	-	-
	Tsu06g00624	1383	Gene3D	-	330	418	IPR042197	-
	Tsu06g00624	1383	Gene3D	-	170	324	IPR027417	-
	Tsu06g00624	1383	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	1080	IPR044974	GO:0006952
	Tsu06g00624	1383	Pfam	NB-ARC domain	189	387	IPR002182	GO:0043531
	Tsu06g00624	1383	Gene3D	Ribonuclease Inhibitor	703	871	IPR032675	-
	Tsu06g00624	1383	Gene3D	Ribonuclease Inhibitor	526	702	IPR032675	-
	Tsu06g00624	1383	ProSiteProfiles	TIR domain profile.	7	171	IPR000157	GO:0007165
	Tsu06g00624	1383	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	175	423	IPR027417	-
	Tsu06g00624	1383	SUPERFAMILY	"Winged helix" DNA-binding domain	400	504	IPR036390	-
	Tsu06g00624	1383	Pfam	TIR domain	8	175	IPR000157	GO:0007165
	Tsu06g00624	1383	SMART	till_3	8	145	IPR000157	GO:0007165
	Tsu06g00624	1383	Gene3D	-	4	169	IPR035897	-
	Tsu06g00624	1383	SUPERFAMILY	L domain-like	517	857	-	-
	Tsu06g00624	1383	PRINTS	Disease resistance protein signature	205	220	-	-
	Tsu06g00624	1383	PRINTS	Disease resistance protein signature	364	378	-	-
	Tsu06g00624	1383	PRINTS	Disease resistance protein signature	270	284	-	-
	Tsu06g00624	1383	PRINTS	Disease resistance protein signature	820	836	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu06g00624	Tsu-Chr6	5425302	5455583	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu06g00624	9	791	WRKY Transcription Factor Family	AT4G12020	30.667	2.09e-81	294

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu06g00624	-		-	gmx:100801337	1510.35