Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00618 ATGGCGAATCACGTTGATGATTTCACACACGACGTTTTTCTTAGTTTCAGAGGCGCAACTCGCTACTCCTTCACTGATCATCTCCATCGTTCACTTCTCCGTCACGGAATCAATGTTTTCAGAGACGATCCAAAACTCAAAATCGGTGACGAAATCGGTCCTTCACTTCTACAAGCAATTGAAGCTTCTAGAATCTCAATCGTTGTTCTTTGTGAAGACTATGCTTCTTCTAGTTGGTGCCTTGATGAACTTGTTAAGATCGTTGACTGTTATGAAAATAATGGAAAATCggttattgttatattttatcGGGTTGAACCTTCTGATGTTAGGCATCAGAAAAATAGCTATAGAGAAGCTATGATTAAACATGAAAAGAGATTTGGAAAGGAATCAGAGAAGGTGAAAGCATGGAAGTTTGCTCTGAAAAGAGTGTGTTCTCTTAGTGGATTTCATTGCAAGGACAATATCTATGAATCTGagtttattgagaaaattgtCAAAGACATCTCGGCTAAACTACCTCCCATGCCTTTACAAATCAAACACCTAGTTGGACTTGATTCTCGTTTCGAACAGGTGAAATCTCTTTTTGATATTGATTCTGATGAAGTACACATTTTGGGGATTTATGGAGGTGGTGGAATAGGAAAAACAACATTTGCCTTGGACATATATAACAAGATCAGACGTCAATTTGAAGCTGCAAGTTTTCTTGCGAATATTAgagaaaaatcaaatgaaagCACTAGTGGCATGGAAGATCTCCAAAAAACACTTTTGTCTGAGATGGGTGAGGAAATACAGACTATGTTTGGAAGCACATTTAGAGGAAGCTCTGAAATAAAACATAGGCTTGCCCAAAAAAGAGTTCTTCTCATACTCGATGATGTTGATTCGGTAAAACAATTGGAATCACTAGCTGGAGGACATGATTGGTTTGGTTCTGGTAGCAGAATCATTGTAACAACAAGAGATATAGATGTTCTACAGAAGCATGATGtgaaaatcaaaacatataaaCTGGAAGAGCTAAATCATCATGAATCCATTGAACTCTTCTGTTGGTATGCCTTTAATATGAGAAGACCTCTAGAAAAGTTTGCAAAAATCTCTTCTCATGCAATAAGTTATGCAAAGGGTATTCCATTGGCTTTAAGAGTAATAGGATCCAATTTGAAAGGTAAGAGCACAGAGGAGTGGGATATTGAACTGCATAAATATACAAAGGTTCCAGATGCTGAGATTCAAGGTGTACTAGAAATAAGCTACAAATGTCTATCTGAATTGGACCAGAAAAGTTTTCTAGACATTGCTTGTTTTTTCAAAGGGGAAAGATGGGATTATGTTAAAAGGATACTAGATGCATGTGGTTTCATCCCAGATATACGAGTATTTGTTAGCAAATGTCTCATAACTGTTGATAAAAATGGTTGTTTAGAAATGCATGATTTAATACAAGACATGGGTAGAGAGATTGTTCGACAGGAATCAACATCAAACCCTGGTGAACGCAGCAGATTATGGTATCATAAGGAAGTTCTTGATGTACTAAAAGGAAATTTGGGAAGTACTATAGTTGAAGGAATAATACTGGATCCCCCAAAACAAGAGAAAGTAGATCATTGGGCATATAATGCCTTTCAGAAGATGAAAAACCTCAGAATTTTGATTGTTAGAAATACATTGTTTACATCAGGACCTAGTTATTTGCCGAATAGTTTACGGCTACTTGATTGGAAGTGGTACCCATCAAAGAATTTCCCGTCAGATTTTTATCCACGACGAATAGTGGACTTCAAGTTACCTCATAGCTCGATGATATTGAAAAATCCCTTTCAGATTTTTGAGGATTTAACATTCATTAATCTTTCCCATAGTCAATCCATAACTCAAATCTCTGATTTGTCTGGAGCCAAAAACTTAAGAGTGTTTGCAGTTGATAAGTGTCTTAAACTGGTAAGGTTTGATATATCCATTGGATTTATGCCTAATCTGGTGTATTTAAGTGCTTCAGGGTGCACTGAGCTCAAAAGTTTTGTGCCAAAAATGTATTTGCCCTCCCTTCAAGTGCTTTCATTTAATTTCTGCAAAAAATTTGAACACTTCCCACAAGTAATGCGAAAGATGGATAAGCCATTAAAGATTAACATGATAAGCACTGCCATTAAAGAGTTTCCAAAGTCTGTTGGTAACCTTACAGGCCTTGAGTATATAGACATGTCAATTTGTAAAGGGCTTAAAGATCTATCAAGTAGCTTATTATTGCTTCCAAAACTgctcattttgaaaattgatggATGCACTCAACTTGGAGAATCATTTCAAAGGTTCAAAGAGCGCCATTCAGTGGCAAACAGGTATCCAAATTTAGAAACACTTCATGTTAGCGAGGCTAATCTATCATGTGAAGATGTTAATGCCATTGTAGAAATATTTCCAAAACTGGAATACTTGAAAGTTTCGCACAATGGATTTGTAGCCCTCCCAAATTGCATCCGAGGATCTATGCACTTGAAAAGTCTTGATGTGAGCTTTTGCAGGAATCTTGCAGTAGTTCCAGAACTACCATTAAGTATTCAGAAAATAGATGCAAGACACTGTCCATCCTTAACTTTAGAAGCATCAAGTTTGCTCTGGTCCAagGTTTCACAAGAGATCCAAAGAGTACAAGTTGTCATGCCGATAAGGGAAATTCCTGAATGGTTTGACTGTGTTTGCACTCAAGAGATTCCACTTTTATGGGCTCGCCGGAAGTTTCCCACTTTTGCTTTAGCATTAGTGTTTAGGGAAATAAAAAAGACAGACAGTTTTTCTGAATTTGTTGATGCTATAAATTTGTCTACTGGAGTCAAAGAATGGCACACTGTAAGCCTGCATTTGTTTATTGATGGCCAAGAAATTTGTAGCAAGGATTGCCATTATTTCAATGTCGGGGCAGATCATGTGCTATTGTGTGATCTACGAGTTTTGTTCAGTGATGAAGAGTGGCAGGGCCTTGGTGCAAGTCTTGGAAATGAATGGAAGGCCATTCAGGTTCAATATGAGTCAGACTTGATTCTGACTAATTGGGGAATTTATGTGTACAAGCAAGAAACAAGTATGGATGATATCCAATTCATACCTCCTAATAACAATTCCTTTTCCTACATGCCATCGTCACGTTTGGTTCCAAAGGGATCTCCAGAGCAGCAAATGAAACATGTGCTGGAAAATTTCAATCCAAGAGACATGTTTAATGAGTATTTGCCTCAAATTGAATCAGAAGAAGGTCCAGTCAGGTCTTCAAAAGTGCTTTTGCGTACTTTGAGGAATGCGAAGGCTGAAATTATAGGCGAGACTTCCTCCTCTGCCTTTGGGGCAAGTCTAATGCAAGACCATGAAGATTCCGCAGAGGATGTGGTTCATGTAGTAGAGATAATAAAAGAGAATCTTTCAGAACATTTTGCTGATTGTTCTCCTGAAGATCTTGAAATTGCAGTCGGAGTTGCAGAAAGAATATTGAGGGCACGGGCAGAATTAATGAAGGAAAATACCATGGACACTGGTATGCCTATTATACTAGAATATACTGATACATCCGGAGCTACAAATCGACGCTTTTGGGGAACTGTGGAGATAAAATTGGGAGATCCATTTTACAAACCATTGTTGAAGAGGCAAAACCAAATTTCCTGGGGACTTGGGACATCTGACCTGAGGGTAATCATTGTTGAATTGAAATGTCAGCCTGCAAGTGAAGAGGAAGCTTCAAGTTCTCGCCTTGATGAATCCTTGGAGGAAGGAAACTACAATCCTGAATTGGAAGAGTTGTTGAAGATGATAGAGAAAGATGCTATGAGATTCAATAAATCTTACGGGAAAATAAAGGCATCTATTGTTCAAGCTGAGGAGTCATTTTCTGATAATTATCTAATGGAAGCATTACTCTACNTATGGCAAGATGAGGGCCAAAGACGAACCTTTTCGCATTCTGAGGACATGCGAAGATTTTTTGATTGCGACACAAACACAACAATGTCATTTTCTGTATCCAGCAGATTAAGGTATGCTCTCTCTATTCCCAATCTCAATTTTCGATTATACTCTACCCCTCTTCCCTCATTCATTCCCAATCTCAACGACGCCGTTTCCTCATTCAATCACATGCTCAACATTAACCCTACTCCACCCATTTTCGAATTCGCCAAAATTTTATCTTCCCTTGTTAAGCTTAATCATTACCAAACTGCTATttccttttctcaacaaatggAATTCAAAGGAATTCAACCTAACATTGTTACTTTAACAATTTTGATTAATTGTTTTTGTCACATTCATCAAATCAATTTTGCATTTTCTGTTTTGGGAAAAATTCTCAAATTAGGTTATCAACCTAATACCGTTACTTTAACGACACTTATGAAAGGTCTTTGTATTAATGGTGATGTTAAGAAAGCGTTGCTTTTTTGTAATGATGTTATAGCGAAGGGATTTCGGTTGAATCAATTTAGTTATGGGATTTTGATTGATGGATTATGTAAAGAAGGTGATACAAGAGGTGCATTGTTGTTGCTTAGAATGATTCAAGGGTTGTTGGTTAAGCCTGATGTGGTAATGTACACCACAATCATTGATAGTTTATGCAAAGAAAATCGAGTAGTTGATGCTTATGATTTATTTTCTGAAATGGTTGGAAATAAGGTTTTTCCTAATGTTGTCACTTATAGTACTCTAATACATGGTTTTTGTATTGCGGGTCGATTGAAAGATGCAGTTGGTTTGTTCAACGAAATGATAGTGAAAAACATCAATCCTGATGTTTATACGtttaatatattgattgatgGTTTATGTAAGGAAGGTGAGATTAAAAAAGCTAGAAGTGTGTTAGATGTGATGATAAAAAGTGGAGTGAAACTTAATGTTGTTACTTATAGTTCTTTAATGAATGGGTATTTTCTCGTCAATGAGGTGAACAAAGCGAAAAATGTATTTAGCACAATGGGGCGATGGGGAGTGACTCCTAATCTTCAGTGCTATAATATTATGATTGATGGATTATGTAAGAACAATATGGTGGATGAAGCCGTGAATCACTTTATGGAAATGCATTCACGAAATATGGTTCCTAATATGGTGACATATAATTCTCTTATTTATGGATTTTGCAAATCTGGAAGAATCTCATGTGTGTTGGATCTTATTGATGACATGCGTGATAGAGGTCAACCGGCTAATGTGATCACCTACACTTCCTTAATAGATGCTTTGTGCAAAAGCCATAATCTTGACATGGCAATTGCattgtttatgaaaattaagGATCGAGGTATTCAGGCAGATCTGTACACATACACAGTACTAATTGACGGATTGTGCAAAGGTGGAAGACTTAAGAATGCACTAGAGGTTTTCATGATACTTCTAAGGGAAGGTTACCATCTAGATGTCTTGACGTATACTGTTATGATCAGTGGCCTTTGTAAAGAGGGCTTGTTTGATGAAGTATTCACTTTGCTTTCAAAAATGGAAGACAATGGTTGCATTCCTGATGCCTGGAATAGTGACAGAAAAGACTACAACAGTTGTATGGGGAGAGCATTTGTCTTGAATTGCATTCAGTCCCCTTTACCTGAATGCATATTTACAGTTTGGATCATGCACAGACAAAGTTCACTGCTGGAAATGTGTCAAACTCTTCATTAA 5691 0.3644 MANHVDDFTHDVFLSFRGATRYSFTDHLHRSLLRHGINVFRDDPKLKIGDEIGPSLLQAIEASRISIVVLCEDYASSSWCLDELVKIVDCYENNGKSVIVIFYRVEPSDVRHQKNSYREAMIKHEKRFGKESEKVKAWKFALKRVCSLSGFHCKDNIYESEFIEKIVKDISAKLPPMPLQIKHLVGLDSRFEQVKSLFDIDSDEVHILGIYGGGGIGKTTFALDIYNKIRRQFEAASFLANIREKSNESTSGMEDLQKTLLSEMGEEIQTMFGSTFRGSSEIKHRLAQKRVLLILDDVDSVKQLESLAGGHDWFGSGSRIIVTTRDIDVLQKHDVKIKTYKLEELNHHESIELFCWYAFNMRRPLEKFAKISSHAISYAKGIPLALRVIGSNLKGKSTEEWDIELHKYTKVPDAEIQGVLEISYKCLSELDQKSFLDIACFFKGERWDYVKRILDACGFIPDIRVFVSKCLITVDKNGCLEMHDLIQDMGREIVRQESTSNPGERSRLWYHKEVLDVLKGNLGSTIVEGIILDPPKQEKVDHWAYNAFQKMKNLRILIVRNTLFTSGPSYLPNSLRLLDWKWYPSKNFPSDFYPRRIVDFKLPHSSMILKNPFQIFEDLTFINLSHSQSITQISDLSGAKNLRVFAVDKCLKLVRFDISIGFMPNLVYLSASGCTELKSFVPKMYLPSLQVLSFNFCKKFEHFPQVMRKMDKPLKINMISTAIKEFPKSVGNLTGLEYIDMSICKGLKDLSSSLLLLPKLLILKIDGCTQLGESFQRFKERHSVANRYPNLETLHVSEANLSCEDVNAIVEIFPKLEYLKVSHNGFVALPNCIRGSMHLKSLDVSFCRNLAVVPELPLSIQKIDARHCPSLTLEASSLLWSKVSQEIQRVQVVMPIREIPEWFDCVCTQEIPLLWARRKFPTFALALVFREIKKTDSFSEFVDAINLSTGVKEWHTVSLHLFIDGQEICSKDCHYFNVGADHVLLCDLRVLFSDEEWQGLGASLGNEWKAIQVQYESDLILTNWGIYVYKQETSMDDIQFIPPNNNSFSYMPSSRLVPKGSPEQQMKHVLENFNPRDMFNEYLPQIESEEGPVRSSKVLLRTLRNAKAEIIGETSSSAFGASLMQDHEDSAEDVVHVVEIIKENLSEHFADCSPEDLEIAVGVAERILRARAELMKENTMDTGMPIILEYTDTSGATNRRFWGTVEIKLGDPFYKPLLKRQNQISWGLGTSDLRVIIVELKCQPASEEEASSSRLDESLEEGNYNPELEELLKMIEKDAMRFNKSYGKIKASIVQAEESFSDNYLMEALLYXWQDEGQRRTFSHSEDMRRFFDCDTNTTMSFSVSSRLRYALSIPNLNFRLYSTPLPSFIPNLNDAVSSFNHMLNINPTPPIFEFAKILSSLVKLNHYQTAISFSQQMEFKGIQPNIVTLTILINCFCHIHQINFAFSVLGKILKLGYQPNTVTLTTLMKGLCINGDVKKALLFCNDVIAKGFRLNQFSYGILIDGLCKEGDTRGALLLLRMIQGLLVKPDVVMYTTIIDSLCKENRVVDAYDLFSEMVGNKVFPNVVTYSTLIHGFCIAGRLKDAVGLFNEMIVKNINPDVYTFNILIDGLCKEGEIKKARSVLDVMIKSGVKLNVVTYSSLMNGYFLVNEVNKAKNVFSTMGRWGVTPNLQCYNIMIDGLCKNNMVDEAVNHFMEMHSRNMVPNMVTYNSLIYGFCKSGRISCVLDLIDDMRDRGQPANVITYTSLIDALCKSHNLDMAIALFMKIKDRGIQADLYTYTVLIDGLCKGGRLKNALEVFMILLREGYHLDVLTYTVMISGLCKEGLFDEVFTLLSKMEDNGCIPDAWNSDRKDYNSCMGRAFVLNCIQSPLPECIFTVWIMHRQSSLLEMCQTLH 1896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00618 1896 Gene3D Tetratricopeptide repeat domain 1666 1735 IPR011990 GO:0005515
Tsu06g00618 1896 Gene3D Tetratricopeptide repeat domain 1524 1595 IPR011990 GO:0005515
Tsu06g00618 1896 Gene3D Tetratricopeptide repeat domain 1596 1665 IPR011990 GO:0005515
Tsu06g00618 1896 Gene3D Tetratricopeptide repeat domain 1803 1849 IPR011990 GO:0005515
Tsu06g00618 1896 Gene3D Tetratricopeptide repeat domain 1736 1802 IPR011990 GO:0005515
Tsu06g00618 1896 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 151 IPR035897 -
Tsu06g00618 1896 SMART till_3 9 148 IPR000157 GO:0007165
Tsu06g00618 1896 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1671 1705 IPR002885 -
Tsu06g00618 1896 Gene3D - 344 428 IPR042197 -
Tsu06g00618 1896 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1566 1600 IPR002885 -
Tsu06g00618 1896 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 1115 - -
Tsu06g00618 1896 Gene3D - 174 341 IPR027417 -
Tsu06g00618 1896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 438 IPR027417 -
Tsu06g00618 1896 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1741 1775 IPR002885 -
Tsu06g00618 1896 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1811 1845 IPR002885 -
Tsu06g00618 1896 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1426 1460 IPR002885 -
Tsu06g00618 1896 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1776 1810 IPR002885 -
Tsu06g00618 1896 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1461 1495 IPR002885 -
Tsu06g00618 1896 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1636 1670 IPR002885 -
Tsu06g00618 1896 Pfam PPR repeat 1632 1663 IPR002885 -
Tsu06g00618 1896 Pfam PPR repeat 1528 1559 IPR002885 -
Tsu06g00618 1896 ProSiteProfiles TIR domain profile. 8 174 IPR000157 GO:0007165
Tsu06g00618 1896 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 1115 IPR044974 GO:0006952
Tsu06g00618 1896 Gene3D - 8 173 IPR035897 -
Tsu06g00618 1896 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1706 1740 IPR002885 -
Tsu06g00618 1896 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1601 1635 IPR002885 -
Tsu06g00618 1896 SUPERFAMILY L domain-like 542 873 - -
Tsu06g00618 1896 Pfam PPR repeat family 1674 1719 IPR002885 -
Tsu06g00618 1896 Pfam PPR repeat family 1398 1439 IPR002885 -
Tsu06g00618 1896 Pfam PPR repeat family 1460 1509 IPR002885 -
Tsu06g00618 1896 Pfam PPR repeat family 1741 1789 IPR002885 -
Tsu06g00618 1896 Pfam PPR repeat family 1565 1614 IPR002885 -
Tsu06g00618 1896 Pfam PPR repeat family 1811 1847 IPR002885 -
Tsu06g00618 1896 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1531 1565 IPR002885 -
Tsu06g00618 1896 Pfam NB-ARC domain 197 402 IPR002182 GO:0043531
Tsu06g00618 1896 TIGRFAM PPR: pentatricopeptide repeat domain 1638 1671 IPR002885 -
Tsu06g00618 1896 TIGRFAM PPR: pentatricopeptide repeat domain 1674 1706 IPR002885 -
Tsu06g00618 1896 TIGRFAM PPR: pentatricopeptide repeat domain 1498 1524 IPR002885 -
Tsu06g00618 1896 TIGRFAM PPR: pentatricopeptide repeat domain 1743 1776 IPR002885 -
Tsu06g00618 1896 TIGRFAM PPR: pentatricopeptide repeat domain 1463 1496 IPR002885 -
Tsu06g00618 1896 TIGRFAM PPR: pentatricopeptide repeat domain 1568 1602 IPR002885 -
Tsu06g00618 1896 TIGRFAM PPR: pentatricopeptide repeat domain 1603 1637 IPR002885 -
Tsu06g00618 1896 TIGRFAM PPR: pentatricopeptide repeat domain 1814 1847 IPR002885 -
Tsu06g00618 1896 TIGRFAM PPR: pentatricopeptide repeat domain 1708 1738 IPR002885 -
Tsu06g00618 1896 TIGRFAM PPR: pentatricopeptide repeat domain 1533 1567 IPR002885 -
Tsu06g00618 1896 TIGRFAM PPR: pentatricopeptide repeat domain 1778 1811 IPR002885 -
Tsu06g00618 1896 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1496 1530 IPR002885 -
Tsu06g00618 1896 Gene3D Ribonuclease Inhibitor 717 891 IPR032675 -
Tsu06g00618 1896 Gene3D Ribonuclease Inhibitor 543 716 IPR032675 -
Tsu06g00618 1896 Pfam TIR domain 10 182 IPR000157 GO:0007165
Tsu06g00618 1896 Gene3D Tetratricopeptide repeat domain 1371 1523 IPR011990 GO:0005515
Tsu06g00618 1896 PRINTS Disease resistance protein signature 731 747 - -
Tsu06g00618 1896 PRINTS Disease resistance protein signature 207 222 - -
Tsu06g00618 1896 PRINTS Disease resistance protein signature 379 393 - -
Tsu06g00618 1896 PRINTS Disease resistance protein signature 285 299 - -
Tsu06g00618 1896 SUPERFAMILY "Winged helix" DNA-binding domain 415 519 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00618 Tsu-Chr6 5343902 5353716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00618 10 813 WRKY Transcription Factor Family AT4G12020 30.760 1.97e-86 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00618 - - mtr:MTR_4g023040 2032.68