Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00616 ATGGCGAATCACAATGATTTCACACACGATGTTTTTCTCAGTTTCAGAGGCGCAACTCGCTACTCCTTCACTGATCATCTCTATCATTCACTTCTCCGTCATGGAATCAATGTTTTCAGAGACGATCCAAAACTCAAAATCGGCGACGAAATCAGTCCTTCTCTTCTAGAAGCAATCGAAGCTTCTAGAACCTCAATTGTTGTTCTCTGTAAAGACTATGCTTCTTCCAGTTGGTGTCTTGACGAACTTGTTAAGATCGTTGACTGTTATGAAAATAATGGAAAATCtgtttatgttatattttataaggttgaacCTTCTGATGTTAGGTACCAGAAAAATAGTTATGAAATTGCTATGAGGAAACATGTAGAGAGATTTGGAAGTGAATCGGAGAAGGTGAAAGCATGGAGGTCAGCTTTGAATAGAGTTTGTTCTCTTAGTGGACTACATTACAAAGATGATAATTATGAATCTGagtttattgagaaaattgtCAAAGACATCTCAGCTAAACTACCTCCCATGCCTTTACAAATCAAATACCTAGTCGGACTCGATTCTCGTTTCGAACAAGTGAAATCTCTTTTTgatattgattttgatgatgaagtACGCATTTTGGGGATTTATGGAGCTGGTGGAATAGGAAAAACAACATTTGCCTTGGATATATATAACAAGATCAGACGTCAATTTGAATCTGCAAGTTTTCTTGCGAATATTAgagaaaaatcaaatgaaagCACTAGTGGCATGGAAGAACTCCAAAAAACACTTTTGTCTGAGATGGGTGAGGAAACACAGACTATGTTTGGAAGCACATTTAGAGGAAGCTCTGAAATAAAACACAGACTTTCCCACAAAAGAGTTCTTCTCATACTGGATGATGTTGATTCGGTAAAACAATTGGAGTTGCTAGCTGGAAGACATGATTGGTTTGGTTCTGGTAGTAGAATCATTGTAACAACAAGAGATATAGATGTTCTACTGAAGCATGATGtgaaaatcaaaacatataaaCTCGAAGAGCTAAATCATCATGAATCCATTGAACTCTTCTGTTGGTATGCCTTTAATATGAGAAGACCTCTAGAAAACTTCGCAAAAATCTCTTCTCATGCAATAAGTTATGCAAAGGGTATTCCATTGGCTTTAAGAGTAATAGGATCCAATTTGAAAGGTAAGAGCATGGAGGAGTGGGATATTGAACTGCATAAATATACAAAGGTTCCAGATGCTGAGATTCAAGGTGTACTAGAAATAAGCTACAAATGCCTATCTGACTTGGACCAGAAAATTTTTCTGGATATTGCTTGTTTTTTCAAAGGGGGAAGATGGGATTATGTTAAAAGGATACTAGATGCTTGTGATTTCTACCCAGTTATTCGACTATTTGTTAGTAAATGTCTCATAACTATTGATGAAAATGGTTGTTTAGAAATGCATGATCTAATACAAGACATGGGTAGAGAGATTGTTCGAAAGGAATCAGCATCAAACCCTGGTGAGCGTAGCAGATTATGGTCTCATGAAGATGTTCTTAATGTACTGAAAGCAAACTTGGGGAGTGCCGCAGTTGAAGGGATAATGCTTCATCCgccaaaacaagaaaaaatagatcATTGGGATTTTACTTCCTTTGAGAAGATGAAAAACCTCAGAATTTTGATTGTTAGGAATACATTATTTTCATTAGGACCTAGCTATTTGCCGAATACTTTACGGCTGCTTGATTGGAAGTGTTACCCGTCAAAGGATTTTCCGTCAAATTTTTATCCATACAGAATTGTTGACTTCAAGTTACCTCATAGCTCTATGATATTAAAAAAGCCCTTTCAGATTTTTAAGGATTTAACATTCATCAATCTCTCTCATAGTCAATCTGTAACTCAAATTCCTGATTTGTCCGGAGCTAAAAACTTACGAGTGTTTGAAGTTGATAAATGCCATAAACTGGTAAGGTTTGATATATCCATTGGATTTATGCCTAATCTGGTGTATTTAAGTGCTTCAGGATGCACTGAGCTTGAAGGTTTTGTGCCAAAAATGTATCTCCCCTCCCTTCAAGTTCTTTCATTTAATTATTGCATAAAGTTTGAACACTTCCCACATGTAATGCAAAAGATGGATACACCATTAAAGATTCACATGATAAATACCGCCATTAAGAAGTTTCCAAATTCTATTGGTAACCTTACAGGGCTTGAGTATATAGACATGTCAAGTTGCAAAGGGCTGAAAGATCTATCAAGTAGCTTTTTATTGCTTCCAAAACTGATCACTATGAAAATTGAAGGATGCTCTCAGCTTGGAGGATCATTTCAACGGTTCAAAGAGCACCATTCAATGGAAAATAGCTATCCAAATTTAGAAACACTTCATTTTAGTGAGGCTAATCTATCATATGAAGATGTTAATGCCATTATTCAAAAGTTTCCAAAATTGGAAGACTTGAAAGTTTCGCACAATGGGTTTGTAGCCCTCCCAATGTGCATCAGAGCATCTGTGCACTTGAAAAGCCTTGATGTGAGCTTTTGTAGGAATCTTACAGAAGTTCCAGAACTTCCATTTAGTATACATAAAATTGATGCAACACACTGTACATCCTTAACTTTAGCGGCATCAAGTGTGCTCTGGTCCAAGGTTTCACAAGAGATCCAACGAGCACAAGTAGTTATGCCAATGCCGAAAAGGGAAATTCCAGAATGTGATGAAGAGTGGCAGGACCTTGATGCAAGTCTTGGAGATGACTGGAAGATCATTCAAGTTCAATATGATTCAGACTTGATTCTGACTAAGTGGGGAGTTTACGTGTACAAGCAAGAAACAAGCATGGATGATATCCAATTCATACCTCCCAATTACATCTCCCTGTTCTACATGTACATGTCATCGTCATGTTTGGCTCCAAAGGGATCTCCAGAGAAGCATATGAAACATGTGTTAGAATGTTTAAACCCCAGAGACATGTTTAATGAGCATTTTCCTAAAGCAAGTACAAGTTCTTCAAAAGTGCTTTTGCGGTGTTTGATGAATGCCAAGGCTGAAGTTATAGAAAAGACTTCTTCTTCTGTCTATGGGGCTAGTCTAAAGCAAGACCATGAAGATTCTGCAGAGGATGTGATTCAAATATTAGAGAtgataaaagagaattttttaGAACATTTTGTTGATTCATCTCCTGAAGACCTTCAAATTGCAAGCGGAATTGCGGAAAGACTATTGAGAGCACGGGTAGAATTAATGGAGGGAAATAGCATGGGCATCGGTATGTGTATTGTTCTAAAGTATACTGATGCATCGGGAGCTACAAATCGACGCTTTTGGGGAACTGTGGGCATAAAATTGGGAGATCCATTTTACAAACCACTGTTCAAGAGGCAAAACCAACTTTCTTGGGAACTTGGGATATCTGACTTGTGGgaaattgttgttgaattgaaaTGCCAGCCTGCAGGTGAAGAGGAAGCTTCAAGCTCTTGGCTTGAAGAATCCTCTGAGGAAGTAAACTACGATCGTGAATTGGAAGAGTTACTGAGGATGATAGAGCAAGATGCTATGAGATTCAATAAATCTTATGggaaaatgaaggcatctaTTGTTAGAACTTCTGAGCGGATTTCTGAAAGTTATCAAGTGGAAACATTTATCTTCCTGGGACTAATGATTGTGGGAAAATTGACAATGTTTGGATCAGCTGCGAAGTTCAAGATCACACCTTATGGGAAGATGAGGGTGGAGGATGAACCTTTTCGCATACTGAGGAAATGTTTCTGGGACTGCAATAGTTGCACAGGGAGAGGATTTGTCTTGAATTGCATTCAGGTATGA 3834 0.3646 MANHNDFTHDVFLSFRGATRYSFTDHLYHSLLRHGINVFRDDPKLKIGDEISPSLLEAIEASRTSIVVLCKDYASSSWCLDELVKIVDCYENNGKSVYVIFYKVEPSDVRYQKNSYEIAMRKHVERFGSESEKVKAWRSALNRVCSLSGLHYKDDNYESEFIEKIVKDISAKLPPMPLQIKYLVGLDSRFEQVKSLFDIDFDDEVRILGIYGAGGIGKTTFALDIYNKIRRQFESASFLANIREKSNESTSGMEELQKTLLSEMGEETQTMFGSTFRGSSEIKHRLSHKRVLLILDDVDSVKQLELLAGRHDWFGSGSRIIVTTRDIDVLLKHDVKIKTYKLEELNHHESIELFCWYAFNMRRPLENFAKISSHAISYAKGIPLALRVIGSNLKGKSMEEWDIELHKYTKVPDAEIQGVLEISYKCLSDLDQKIFLDIACFFKGGRWDYVKRILDACDFYPVIRLFVSKCLITIDENGCLEMHDLIQDMGREIVRKESASNPGERSRLWSHEDVLNVLKANLGSAAVEGIMLHPPKQEKIDHWDFTSFEKMKNLRILIVRNTLFSLGPSYLPNTLRLLDWKCYPSKDFPSNFYPYRIVDFKLPHSSMILKKPFQIFKDLTFINLSHSQSVTQIPDLSGAKNLRVFEVDKCHKLVRFDISIGFMPNLVYLSASGCTELEGFVPKMYLPSLQVLSFNYCIKFEHFPHVMQKMDTPLKIHMINTAIKKFPNSIGNLTGLEYIDMSSCKGLKDLSSSFLLLPKLITMKIEGCSQLGGSFQRFKEHHSMENSYPNLETLHFSEANLSYEDVNAIIQKFPKLEDLKVSHNGFVALPMCIRASVHLKSLDVSFCRNLTEVPELPFSIHKIDATHCTSLTLAASSVLWSKVSQEIQRAQVVMPMPKREIPECDEEWQDLDASLGDDWKIIQVQYDSDLILTKWGVYVYKQETSMDDIQFIPPNYISLFYMYMSSSCLAPKGSPEKHMKHVLECLNPRDMFNEHFPKASTSSSKVLLRCLMNAKAEVIEKTSSSVYGASLKQDHEDSAEDVIQILEMIKENFLEHFVDSSPEDLQIASGIAERLLRARVELMEGNSMGIGMCIVLKYTDASGATNRRFWGTVGIKLGDPFYKPLFKRQNQLSWELGISDLWEIVVELKCQPAGEEEASSSWLEESSEEVNYDRELEELLRMIEQDAMRFNKSYGKMKASIVRTSERISESYQVETFIFLGLMIVGKLTMFGSAAKFKITPYGKMRVEDEPFRILRKCFWDCNSCTGRGFVLNCIQV 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00616 1277 ProSiteProfiles TIR domain profile. 7 173 IPR000157 GO:0007165
Tsu06g00616 1277 SUPERFAMILY "Winged helix" DNA-binding domain 415 519 IPR036390 -
Tsu06g00616 1277 Gene3D - 7 172 IPR035897 -
Tsu06g00616 1277 Pfam NB-ARC domain 202 402 IPR002182 GO:0043531
Tsu06g00616 1277 Pfam TIR domain 9 179 IPR000157 GO:0007165
Tsu06g00616 1277 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 905 1027 IPR044974 GO:0006952
Tsu06g00616 1277 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 887 IPR044974 GO:0006952
Tsu06g00616 1277 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 905 1027 - -
Tsu06g00616 1277 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 887 - -
Tsu06g00616 1277 SMART till_3 8 147 IPR000157 GO:0007165
Tsu06g00616 1277 Gene3D Ribonuclease Inhibitor 717 880 IPR032675 -
Tsu06g00616 1277 Gene3D Ribonuclease Inhibitor 538 716 IPR032675 -
Tsu06g00616 1277 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 149 IPR035897 -
Tsu06g00616 1277 Gene3D - 344 428 IPR042197 -
Tsu06g00616 1277 Gene3D - 173 340 IPR027417 -
Tsu06g00616 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 438 IPR027417 -
Tsu06g00616 1277 PRINTS Disease resistance protein signature 379 393 - -
Tsu06g00616 1277 PRINTS Disease resistance protein signature 207 222 - -
Tsu06g00616 1277 PRINTS Disease resistance protein signature 731 747 - -
Tsu06g00616 1277 PRINTS Disease resistance protein signature 285 299 - -
Tsu06g00616 1277 SUPERFAMILY L domain-like 538 873 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00616 Tsu-Chr6 5328525 5334448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00616 9 780 WRKY Transcription Factor Family AT4G12020 31.870 1.97e-89 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00616 - - mtr:MTR_4g023040 1428.31