Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00598 ATGTTGTTTTCCATTCCATTGATTGTTATCTTTTCAAGCCTTTGCTTACTAACCAAACAAAAAGAGATAAAAGAGAGTGATGAAGAGATCAGTGTGGGCCATAGTACTGAACAAGTGGGCAACGTTGAAGAACCTATCCTGAATTCCCAAAGCAAGACAACTTTTAAAGAGTGTCGGAAAAATCACGCATCAAGCATTGGGGGCTATGCTCTTGATGGTTGTTGCGAGTTCTTTTCTGATGGACTTGAAGGTACGATCGAATTTTTCAGATGTGATGCTTGTAAGTGTCATCGAAACTTTCACCGTAAAGAAATTGTTGCTATAGAACCAACCCATTTTCTATTCAAAACCACCTACAATCCTCAACCAACTCCCATATCGACTGTCTTTCAGACGTCAAATGGTTACCACCATGTGACTGGGCCACCGATGGGGACCACAACTGTCCCTACTTTTCCTTCTGATCTAATCCATGACGAGGCTCAATTTCATGTTACCGATCCAATCAATGGCAGTGGTGGAGAAGGTTCGTCGAGCTCTAAGAAAAGGTTCAGGACTAAATTTAGTCATGAACAAAAAGAGAAGATGCTGAATTTCGCGATGAAAATTGGTTGGAGGATTAAGAAACATGATCAAAATGTTGTTGAGATTTTTTGCAACAAGATTGGGGTGAAGTTTCAAGTGTTTAAGGTTTGGATGCTAAACAATAAACACACCATTGGGAAAAAGTTGTAG 735 0.4 MLFSIPLIVIFSSLCLLTKQKEIKESDEEISVGHSTEQVGNVEEPILNSQSKTTFKECRKNHASSIGGYALDGCCEFFSDGLEGTIEFFRCDACKCHRNFHRKEIVAIEPTHFLFKTTYNPQPTPISTVFQTSNGYHHVTGPPMGTTTVPTFPSDLIHDEAQFHVTDPINGSGGEGSSSSKKRFRTKFSHEQKEKMLNFAMKIGWRIKKHDQNVVEIFCNKIGVKFQVFKVWMLNNKHTIGKKL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00598 244 Gene3D - 168 241 - -
Tsu06g00598 244 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 181 237 IPR006455 -
Tsu06g00598 244 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Tsu06g00598 244 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 240 - -
Tsu06g00598 244 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 38 240 - -
Tsu06g00598 244 SUPERFAMILY Homeodomain-like 171 242 IPR009057 -
Tsu06g00598 244 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Tsu06g00598 244 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00598 Tsu-Chr6 5156651 5157385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00598 51 240 ZF-HD Transcription Factor Family AT4G24660 43.684 8.40e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu06g00598 ZF-HD_dimer 2.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00598 - - mtr:MTR_8g069080 251.906