Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00578 ATGGCCCTTTTCGCTAACCATCCATCATCCTTCCCAGCCGATCTTCAAATTCTTGCAGTCGATCATCACGTAGCCGCTCTCTGCACTATCCAAGACATCTGCAATAACCTATCTTGTCAAGTGATCACTCGTTGTAGTGTTTCTGATGCATGGAATTACTTGTTCGCccaaaattttgatatcattCTCATCGAAGCTTGTATGCCAAGCAACGATACTTTTGCTTTTGTTGGACAAATGACTTCACTTTTCAAATTTCCTGTCATTGTGATGTCTCTTGATCACACGCGGTCTTGTGTTATGGATTCTATTGCCAAAGGGTCTTGCGCATTCTGGTCAAAGCCATTGCATGAGAATTAA 360 0.4083 MALFANHPSSFPADLQILAVDHHVAALCTIQDICNNLSCQVITRCSVSDAWNYLFAQNFDIILIEACMPSNDTFAFVGQMTSLFKFPVIVMSLDHTRSCVMDSIAKGSCAFWSKPLHEN 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00578 119 ProSiteProfiles Response regulatory domain profile. 16 119 IPR001789 GO:0000160
Tsu06g00578 119 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 119 IPR045279 GO:0009736
Tsu06g00578 119 Gene3D - 12 119 - -
Tsu06g00578 119 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 9 119 - -
Tsu06g00578 119 SUPERFAMILY CheY-like 14 117 IPR011006 -
Tsu06g00578 119 Pfam Response regulator receiver domain 17 118 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00578 Tsu-Chr6 5015874 5016481 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00578 11 116 Response Regulator Gene Family AT4G16110 28.182 3.88e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu06g00578 Response_reg 3.8e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00578 - K08209 cam:101491966 86.2705