Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00572 ATGGCCCTTTTCGCTAACCATCCATCATCCTTCCCAGCCGGTCTTCAAATTCTTGCAGTGGATCATCACGTAGCCGCTCTCTGCACTATCCAAGACATCTGCAACAACCTATCTTGTCAAGTGATCACTTGTTGTAGTGTTTCTGATGCATGGAATTACTTGTTCGCccaaaattttgatatcattCTCATCGAAGCTTGTATGCCAAGCAACGATACTTTTGCTTTTGTTGGACAAATGACTTCACTTTTCAAATTTCCTGTCATTGTGATGTCTCTTGATCACACGCCGTCTTGTGTTATGCAGTCTATTGCCAAAGGGTCTTGCGCATTCTGGTCTAGGTCAGTACCGATTAAACCTTATGGCATTCTGCAAAGACTTAAACGCAAGAACTCAGAAATTCAAGGTGTCCTCAAAAACTTGGCACGCCTTCAATTTAAAGTTCGGAAGTGTTTGATTGAGGTATGTATGCTTTTGGACTTGTTGGGTGTTTCTGAAGAGGAAAGACCGAGTTTGCCGTTGGCATCAGGTCAGCATTGGTGGAACAGGCCAATGTTTGGTAAGCTAGAAAAGTGGAAAACAAGAGTGACTATAAGATTGGAAAAACTTAAGGGTTCAAATCTTAGTGAAGATGGCCAGCCTACCAATATCGGCATTGTCAGTTCAGACTGTTCAGTTAGACgTTTTCTTAATGAAATGGAATACGCTGACCTCTTCaaccaaaaaccaaaatatgaTTGCCTTCTTTTTGATTTAGATGATACTTTGTATCCACTTAGTTCTGGTCTTGCAACAGCAATTCTACAAAATCTTAAAGACTACATGGTCGAAAAGCTTGGCATAGAACCAACGAAAACCGATGACTTATGTAACCTTCTATACAAGAACTATGGAACAACTCTAGCAGGGTTAAGGGCAATTGGATATGACTTTGACTATGATGAATTTCATAGTTTTGTTCATGGAAGATTACCTTATGAGAACTTGAAACCAGACCCAATTCTAAGGAACATGTTGTTGAGCCTACCCTATAGGAAACTTATCTTCACAAATGCAGACAAAGTTCATGCTCTTAAGGCACTGAGGATACTTGGATTAGAAGATTGTTTTGAAGGAATTATTTGCTTTGAGACCCTTAATCCAATCCATAAGAACAGTGTctctgatgatgaagatgacaTTTACTTTATAGGTTCAACAAGCACTACTAAACCAACCACTAGTAATAGTGCAAACAACTCTCAAATCTTTGACATCATAAACCATTTTGCTCAGCTCAATCCCAGTGGAATCCTGCCAAAGACACCAATTGTTTGCAAACCATCAGAAAATGCCATTCAATTAGCTCTCAACATAGCCAACATTAATCCACAAAGAACTTTGTTCTTCGAGGACAGTGTCCGCAACATACAAGCTGGAAAACGTTTGGGACTTCACACTGTTCTGATTGGGAAATCACAAAGAGTTGAAGGTGCAGATTATGCATTGGAAAGCATCCATAACCTTACTGAGGCAGTGCCTGATCTATGGGAGTCTGACATAAAATCAGAAGCTGTATACACTGGGAACCTTGCTGTGGAGACAACTGTAACTGCTTAA 1599 0.3884 MALFANHPSSFPAGLQILAVDHHVAALCTIQDICNNLSCQVITCCSVSDAWNYLFAQNFDIILIEACMPSNDTFAFVGQMTSLFKFPVIVMSLDHTPSCVMQSIAKGSCAFWSRSVPIKPYGILQRLKRKNSEIQGVLKNLARLQFKVRKCLIEVCMLLDLLGVSEEERPSLPLASGQHWWNRPMFGKLEKWKTRVTIRLEKLKGSNLSEDGQPTNIGIVSSDCSVRRFLNEMEYADLFNQKPKYDCLLFDLDDTLYPLSSGLATAILQNLKDYMVEKLGIEPTKTDDLCNLLYKNYGTTLAGLRAIGYDFDYDEFHSFVHGRLPYENLKPDPILRNMLLSLPYRKLIFTNADKVHALKALRILGLEDCFEGIICFETLNPIHKNSVSDDEDDIYFIGSTSTTKPTTSNSANNSQIFDIINHFAQLNPSGILPKTPIVCKPSENAIQLALNIANINPQRTLFFEDSVRNIQAGKRLGLHTVLIGKSQRVEGADYALESIHNLTEAVPDLWESDIKSEAVYTGNLAVETTVTA 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00572 532 SUPERFAMILY CheY-like 14 129 IPR011006 -
Tsu06g00572 532 SUPERFAMILY HAD-like 244 511 IPR036412 -
Tsu06g00572 532 SFLD C1.5.3: 5'-Nucleotidase Like 241 511 IPR010237 -
Tsu06g00572 532 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 233 532 - -
Tsu06g00572 532 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 246 482 IPR010237 -
Tsu06g00572 532 Pfam Haloacid dehalogenase-like hydrolase 411 482 IPR041492 -
Tsu06g00572 532 ProSiteProfiles Response regulatory domain profile. 16 131 IPR001789 GO:0000160
Tsu06g00572 532 Gene3D - 311 510 IPR023214 -
Tsu06g00572 532 Gene3D - 9 136 - -
Tsu06g00572 532 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 436 483 IPR006439 -
Tsu06g00572 532 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 233 532 - -
Tsu06g00572 532 Coils Coil 124 144 - -
Tsu06g00572 532 CDD HAD_5NT 247 484 IPR010237 -
Tsu06g00572 532 SFLD Haloacid Dehalogenase 241 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00572 Tsu-Chr6 4951069 4958521 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00572 9 138 Response Regulator Gene Family AT5G49240 25.185 3.26e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu06g00572 HAD_2 3e-05 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00572 K07025 - gmx:100787007 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00572 06 4951069 4958521 Tsu06g00572 06 4951069 4958521 ECH