Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00564 ATGGAACAATTAGAGGCTTCCACTAATCAAGAACTGAATCAGAATATCCCTTTGTTGAAACTTCCTACACAGATCCTTTGTCGTATCGTGAATATAAGTTTATTGGCCGAACAAGAAACGGATGAGGTTTATGCGCAGATAACTTTGGTCCCTGAGCCAAATCAAGATGAGCCAACGATTCCTGATCCGGTCGCTGATGAACCTCCGAGGCCGAAAATTCACTCATTCTGCAAGATCTTAACTGCTTCGGATACTAGCACACATGGTGGCTTCTCTGTTCTCAGAAAACATGCCACAGAATGTCTTCCTCCGTTGGATATGTCACAACCAACACCAACTCAAGAATTGGTTGCTAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGgTCAACCGCGCAGACACCTACTTACAACTGGATGGAGTACTTTTGTGACTTCTAAAAGATTAGTCGCTGGTGATACCTTTGTATTCTTGAGAGGGGAAAATGGGGAATTACGTGTCGGAGTGAGGCGTCTTGCGCGTCAGTCAAGTAACATGCCATCATCTGTGCTTTCTAGCCAAAGCATGCACCTTGGAGTTCTTGCAACTGCCTCCCATGCTGTTGCTTCTCAGACTCTTTTTGTTGTATATTATAAGCCGAGgaCGAGCCAGTTCATTGTAAGCGTGAACAAGTACTTGGCAGCTGTGAATAATAAGTATACTGTCGGCATGAGGTTCAAGATGAAGTTTGAGAGTGATGATTCTGCCGAGTCTGACAAAAGATTTTCCGGTACCATAATTGGAGTGGACGATATGTCTCCCCATTGGCCAAATTCTAAATGGCGATCACTTAAGGTTCAATGGGATGAACCTTCAGCTATTGCAAGACCTGACAGGGTTTCACCATGGGAGATAGAACCGTTTGTTTCCTCATCTTCTACACCATCAGTTCAACCTACAGCTGTGAAGAGTAAAAGGCCTCGACCACCGAGTGAAATTCCCGACGTTGACACAACATCGGCTGCCTCTATTTACTGGGATGCTAGACTGACGCAGACTGACAAGACACAACGTAGCGTTTTAGCTGAAAGCCAAAAAAGTGATACTGGTATGTGGCATCATAAGAAAACCGATATTATGAATAGTAAAGGCAACAACAACCCTTTATTTAGAAATCATACAGAAGGAAGTTGGCTATCTTCTCCCCGTTCTAGCTGTCCGTTTCACTTGCTTCATGAAACAACTGTCGACAACAAAGCCGAGACCGGTACAAGCTATCGGTTGTTTGGAATCGATCTAATAGATCATTCCAAAAAATCGGCTGCACCAGGGAAAGCCTTGCATGCGGCAAACATAACTGGAGTTACCGCTGAAGTTAGTTCCAGCACTTTGTCCAGCATCGATACTGGCCGTAAGTCTGACATCTCAAAGGCTACTTCTATGGAGAATAGACAAGATTTGCAACAAGTATCACCGAAGGAGACTCAAAGCAAGCAAATTTGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTAGAGTGGGACGCGCTGTGGATTTGGCAACATTGAATGGGTATGATCAACTTATTGGTGAATTGGAAGAGTTGTTTGACATCAAGGGACAGCTTCAACATCGGAATAAATGGGAAATTGTCTTCACCGATGATGAAGGAGATATGATGCTTGTGGGAGATGATCCATGGCCTGAATTTTGTAACATGGTGAGAAAAATCTTCATTTGTTCAAGCCAAgatgtgaagaagatgaaatcaGGAAGCAAACTTCCAATCAATTCTTCGATGGAAGAAGGGACTGTAATAAGTTCAGACACAACTGAAACATGA 1842 0.4289 MEQLEASTNQELNQNIPLLKLPTQILCRIVNISLLAEQETDEVYAQITLVPEPNQDEPTIPDPVADEPPRPKIHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQSSNMPSSVLSSQSMHLGVLATASHAVASQTLFVVYYKPRTSQFIVSVNKYLAAVNNKYTVGMRFKMKFESDDSAESDKRFSGTIIGVDDMSPHWPNSKWRSLKVQWDEPSAIARPDRVSPWEIEPFVSSSSTPSVQPTAVKSKRPRPPSEIPDVDTTSAASIYWDARLTQTDKTQRSVLAESQKSDTGMWHHKKTDIMNSKGNNNPLFRNHTEGSWLSSPRSSCPFHLLHETTVDNKAETGTSYRLFGIDLIDHSKKSAAPGKALHAANITGVTAEVSSSTLSSIDTGRKSDISKATSMENRQDLQQVSPKETQSKQICSRSRTKVQMQGVRVGRAVDLATLNGYDQLIGELEELFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRKIFICSSQDVKKMKSGSKLPINSSMEEGTVISSDTTET 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00564 613 Gene3D - 497 589 - -
Tsu06g00564 613 CDD B3_DNA 74 176 IPR003340 GO:0003677
Tsu06g00564 613 MobiDBLite consensus disorder prediction 306 335 - -
Tsu06g00564 613 MobiDBLite consensus disorder prediction 464 496 - -
Tsu06g00564 613 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 419 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu06g00564 613 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 415 600 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu06g00564 613 SUPERFAMILY DNA-binding pseudobarrel domain 65 205 IPR015300 -
Tsu06g00564 613 Pfam AUX/IAA family 481 537 IPR033389 -
Tsu06g00564 613 Pfam AUX/IAA family 544 585 IPR033389 -
Tsu06g00564 613 SMART B3_2 76 178 IPR003340 GO:0003677
Tsu06g00564 613 Gene3D - 237 312 - -
Tsu06g00564 613 ProSiteProfiles B3 DNA-binding domain profile. 76 178 IPR003340 GO:0003677
Tsu06g00564 613 SUPERFAMILY CAD & PB1 domains 502 577 - -
Tsu06g00564 613 ProSiteProfiles PB1 domain profile. 501 582 IPR000270 GO:0005515
Tsu06g00564 613 Pfam Auxin response factor 202 283 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu06g00564 613 Pfam B3 DNA binding domain 76 176 IPR003340 GO:0003677
Tsu06g00564 613 Gene3D - 73 177 IPR015300 -
Tsu06g00564 613 PANTHER AUXIN RESPONSE FACTOR 9 1 419 - -
Tsu06g00564 613 PANTHER AUXIN RESPONSE FACTOR 9 415 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00564 Tsu-Chr6 4866189 4870490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00564 1 594 B3 DNA Binding Superfamily AT4G23980 59.308 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu06g00564 B3 7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00564 K14486 - gmx:100779003 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01167 04 11596130 11601738 Tsu06g00564 06 4866189 4870490 PCT