Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00562 ATGAAGAACATGATGGTTCCTCCTTCTCATAGTTCACTCAACTGTTGTTTTCAGATTCTACTTGCTCTTCTTCTTTTAAGTTTGCAGATATTAACTCATCACATCGAAGCTTATGGCTCAAAGGTTGAAGTTCTTCCTGGTTTTGAAGGGCCTCTTCCTTTTCAACTTGAAACTGGGTATGTGGGACTGGGGGAGACAGATGATGATATGCAAGTGTTCTACTATTTTGTCAAATCAGAGAATGATCCTCAAAAAGACCCTCTTATGCTTTGGTTAACTGGCGGCCCCGgttgttcttctttttctgGCCTTGTCTCTCAAATAGGTCCATTTCAATTCGAAATCAAGGAGTATGATGGGAGCTTGCCTAGTTTGGTCTTGAGGCCACAGTCATGGACAAAGCTATGCAGCGTTATTTTCGTAGATTTGCCACTTGGAACTGGTTTCTCATATGCGAAAAATCTCACTGCTCACCGAAGCGATTGGAAATTAATTCACCATACTCATCAATTTCTTAGGAAGTGGCTGATTGACCACCCTGAATTTCTTTCAAATGAATTCTACATTGGAGCTGATTCATACTCTGGCATTCCTGTCCCAGCCATTcttcaagaaatttcaaatgGAAATGAAAAAGGTCTCCAACCATTGATAAATCTTCAGGGATATCTGCTAGGGAATCCCGTCACAACaaacagagaaaaaaatgataaaatccCATATGCTCATGGAATGGGACTCATTTCTGATGAACTCTACgcgTCGCTGCAGAAAAATTGTAAAGGAGAATATATTGATGTAGATTCCAGAAATGAGTTGTGTTTAAGAGATCTTCAGTACTTTGATGAGGCAAGTAATGCCTGCCTTTCAGGAATTAATAAGTTCGAGATTTTGGGTAGTTATTGTGAAGATGATTCGCCACTCTGGAGGAGATCTTTGACTCAGGAGTTGAAGGCATCTCTTAGTTCTCATCTCACAGTGCCTGAATTAAGCTGCGGAAAATATAGATTTTACCTCGAAACTAAATGGGCTAACGATGAGCATGTTCGCAAGGCACTGCATATTCGAGAGGGAACCATAGGGAAATGGGTACGTTGTTACAGTACTGATTTTGAGTATGAGATCTTTAGTAGCATTGAGTTTCATGCAAATCTAAGCAAAAAAGGATACCGCTCTTTGATATACAGTGGAGATCATGATTCAGTTATTACTTTCATCTCAACTCAAGCGTGGATAAGGACTCTAAATTACTCCATTGTGGATGATTGGAGGCCATGGTTTGTAAATGGCCAAGTGGGAGGATACACAAGGACTTACTTGAATCAAATGACATTTGCAACTGTGAAGGGTGCAGGACATACGGCTCCTCAGTATACTCCTGATCAATGTTTTGCCATGTTCACTAAGTGGATATCTAAGTTGCCTTTGTAA 1431 0.3885 MKNMMVPPSHSSLNCCFQILLALLLLSLQILTHHIEAYGSKVEVLPGFEGPLPFQLETGYVGLGETDDDMQVFYYFVKSENDPQKDPLMLWLTGGPGCSSFSGLVSQIGPFQFEIKEYDGSLPSLVLRPQSWTKLCSVIFVDLPLGTGFSYAKNLTAHRSDWKLIHHTHQFLRKWLIDHPEFLSNEFYIGADSYSGIPVPAILQEISNGNEKGLQPLINLQGYLLGNPVTTNREKNDKIPYAHGMGLISDELYASLQKNCKGEYIDVDSRNELCLRDLQYFDEASNACLSGINKFEILGSYCEDDSPLWRRSLTQELKASLSSHLTVPELSCGKYRFYLETKWANDEHVRKALHIREGTIGKWVRCYSTDFEYEIFSSIEFHANLSKKGYRSLIYSGDHDSVITFISTQAWIRTLNYSIVDDWRPWFVNGQVGGYTRTYLNQMTFATVKGAGHTAPQYTPDQCFAMFTKWISKLPL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00562 476 PANTHER PEPTIDASE S10, SERINE CARBOXYPEPTIDASE, ALPHA/BETA HYDROLASE-RELATED 17 475 - -
Tsu06g00562 476 Pfam Serine carboxypeptidase 46 472 IPR001563 GO:0004185|GO:0006508
Tsu06g00562 476 Gene3D alpha/beta hydrolase 44 475 IPR029058 -
Tsu06g00562 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 200 IPR001563 GO:0004185|GO:0006508
Tsu06g00562 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 151 IPR001563 GO:0004185|GO:0006508
Tsu06g00562 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 443 456 IPR001563 GO:0004185|GO:0006508
Tsu06g00562 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 140 IPR001563 GO:0004185|GO:0006508
Tsu06g00562 476 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 17 475 IPR001563 GO:0004185|GO:0006508
Tsu06g00562 476 SUPERFAMILY alpha/beta-Hydrolases 45 475 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00562 Tsu-Chr6 4848546 4859102 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00562 33 65 Calmodulin-binding Proteins AT2G22960 66.667 8.74e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00562 K16296 - gmx:100780069 744.191