Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00561 ATGGTTCCTCCTTCTCATAGTTCACTCAACTATTGTTTTCAGATTCTACTTGCTCTTCTGCTTTTTAGTTTGCAGATATTAACTCACCAACTGGAAGCTTATAGCTCAAAGGTAGAAGTGCTTCCTGGTTTTGAAGGGCCTCTTCCTTTTCAACTTGAAACTGGGTATGTGGGACTGGGGGAAACAGATGATGACATGCAAGTGttctattattttatcaaatcagAGAATAATCCAAAGAAAGACCCTCTTATGCTTTGGTTAACTGGTGGTCCTGgttgttcttctttttctgGCCTTGTCTATCAAATAGGTCCCATTGAATTCGAAATCAAGGAGTACAACGGCAGCGTGCCTAGTTTGGTCTTGAGGCCACAATCATGGACAAAGCTATGCAGCATTATTTTTGTAGATTTGCCACTTGGAACTGGTTTCTCGTATGCGAAAAATCTCACTGCTCACCGAAGCGACTGGAAATTAGTTCACCATACTCATCAATTTCTTAGGAAGTGGCTGATTGATCACCCTGAATTTCTTTCAAATGAATTCTACATTGGAGCCGATTCATACTCTGGCATTCCTGTTCCCGTTATTcttcaagaaatttcaaatggAAATGAAAAAGGTCTCCAACCATTGATAAATCTTCAGGGATATCTGCTAGGGAACCCCATGACAACATACAGagaagaaaattataaaatccaATATGCTCATGGAATGGGACTCATTTCTGATGAACTCTATgcgTCGCTGCAGAAAAATTGTAACGGAGAATATATTGATGTAGATTCCAGCAATGACTTGTGTTTAAGAGATCTTCAGTACTTTGATGAGGCAAGTAATACCATCCAATTTTGCCTTTCAGGAATTAATACGTTCAACATTTTGGATCGCTATTGTGATGATGATTCGCATCTTTGGAGGAGATCTTTGACTCAGGAGTTGAAGGAATCTCTAAGTTCTCATCTCACAGTGCCCGAATTAAGCTGCCAAATTTATGGTTTTTACCTCGCTACTAAATGGGCTAACGATGAGCGTGTTCGCAAGGCACTGCATATTCGAGAGGGAACCATACGGAAATGGGAACGTTGTTACACTACTGATTTTGAGCTTGAGATCTTTAGTAGCTTTGAGTTTCATGCAAATCTAAGCAAAAAAGGATACCGCTCTTTGATATACAgTGGAGATCATGATGCAGTTGTTCCTTTCATGTCTACTCAAGCTTGGATAAGAGCTCTAAACTACTCCATTGTTGATGATTGGAGGCCATGGTTTGTAAATGGCCAAGTGGGAGGATACACAAGGACTTACTCAAATCGAATGACATTTGCAACTGTGAAGGGTTCAGGACATACAGCTCCTGAGTATACTCCTGAGCAATGTTTTTCCATGTTCACTAAGTGGATATCTAAGTTGCCTTTTTTGCAGATATTAACTCACCAACTGGAAGCTTATAGCTCAAAGGTAGAAGTGCTTCCTGGTTTTGAAGGGCCTCTTCCTTTTCAACTTGAAACTGGGTATGTGGGATTGGGGGAAACAGATGATGATGACATGCAAGTGttctattattttatcaaatcagAGAATAATCCTAACAAAGATCCTCTTATACTTTGGTTAGCTGGTGGTCATGGATGTTCTTCTTTTTCTGGCCTTGTCGATCAAatagGTCCATTTGAATTCGAAATGAAGGAGTACGATGGGAGCGTGCCTAGTTTGGACTTGAGGCCACAGTCATGGACAAAGCTATGCAGCATTATTTTTGTAGATTTGCCACTTGGAACTGGTTTCTCGTATGCGAAAAATCTCACTGCTCACCGAAGCGATTGGAAATTAATTCACCATACTCATCAATTTCTTAGGAAGTGGCTGATTGATCACCCTGAATTTCATTCAAATGAATTCTACTTTGGTGGTGATTCATACTCTGGCATTCCTGTCCCAGCCATTGTTCAAGAAATTTTAAATGGAAATGAAAAAGGTCTCCAACCACTGATAAATCTTCAGGGATATCTGCTAGAGAATCCCGTCACAACaaacagagaaaaaaatgataaaatccCATATGCTCATGGAATGGGACTCATTTCTGATGAACTCTACGCgTCGCTGCAGAAAAATTGTAAAGGAGAGTATATTGATGTAGATTCTAGAAATGACTTGTGTTTAAGAGATCTTCAGTACTTTGATGAGGCAAGTAATGCCGTCCAATTTAAATATCGATTTTACCTCGAAACTAAATGGGCTAACGATGAGCGTGTTCGCAAGGCGCTGCATATTCGAGAGGGAACCGTAGGGAAATGGGTACGTTGTTACACTACTGATTTTGAGAAAGAGATCTTTAGTAGCATTGAGTTTCATGCAAATCTAAGCAAAAAAGGATACCGCTCTTTGATATACAGTGGAGATCATGATTTAGTTGTTCCTTTCATGTCAACTCAAGCTTGGATAAGGGCTCTAAATTACTCCATTGTTGATGATTGGAGGCCATGGTTTGTAAATGACCAAGTGGGAGGATATACAAGGACTTACTCGAATCAAATGACATTTGCAACTGTGAAGGGTTCAGGACATACAGCTCCTCAGTATACTCCTGATCAATGTTTTGGCATGTTCACTAAGTGGATATCTAAGTTGCCTTTGTAA 2649 0.3843 MVPPSHSSLNYCFQILLALLLFSLQILTHQLEAYSSKVEVLPGFEGPLPFQLETGYVGLGETDDDMQVFYYFIKSENNPKKDPLMLWLTGGPGCSSFSGLVYQIGPIEFEIKEYNGSVPSLVLRPQSWTKLCSIIFVDLPLGTGFSYAKNLTAHRSDWKLVHHTHQFLRKWLIDHPEFLSNEFYIGADSYSGIPVPVILQEISNGNEKGLQPLINLQGYLLGNPMTTYREENYKIQYAHGMGLISDELYASLQKNCNGEYIDVDSSNDLCLRDLQYFDEASNTIQFCLSGINTFNILDRYCDDDSHLWRRSLTQELKESLSSHLTVPELSCQIYGFYLATKWANDERVRKALHIREGTIRKWERCYTTDFELEIFSSFEFHANLSKKGYRSLIYSGDHDAVVPFMSTQAWIRALNYSIVDDWRPWFVNGQVGGYTRTYSNRMTFATVKGSGHTAPEYTPEQCFSMFTKWISKLPFLQILTHQLEAYSSKVEVLPGFEGPLPFQLETGYVGLGETDDDDMQVFYYFIKSENNPNKDPLILWLAGGHGCSSFSGLVDQIGPFEFEMKEYDGSVPSLDLRPQSWTKLCSIIFVDLPLGTGFSYAKNLTAHRSDWKLIHHTHQFLRKWLIDHPEFHSNEFYFGGDSYSGIPVPAIVQEILNGNEKGLQPLINLQGYLLENPVTTNREKNDKIPYAHGMGLISDELYASLQKNCKGEYIDVDSRNDLCLRDLQYFDEASNAVQFKYRFYLETKWANDERVRKALHIREGTVGKWVRCYTTDFEKEIFSSIEFHANLSKKGYRSLIYSGDHDLVVPFMSTQAWIRALNYSIVDDWRPWFVNDQVGGYTRTYSNQMTFATVKGSGHTAPQYTPDQCFGMFTKWISKLPL 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00561 882 PANTHER PEPTIDASE S10, SERINE CARBOXYPEPTIDASE, ALPHA/BETA HYDROLASE-RELATED 737 881 - -
Tsu06g00561 882 Gene3D alpha/beta hydrolase 484 882 IPR029058 -
Tsu06g00561 882 SUPERFAMILY alpha/beta-Hydrolases 493 881 IPR029058 -
Tsu06g00561 882 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 15 474 IPR001563 GO:0004185|GO:0006508
Tsu06g00561 882 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Tsu06g00561 882 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Tsu06g00561 882 PRINTS Carboxypeptidase C serine protease (S10) family signature 624 649 IPR001563 GO:0004185|GO:0006508
Tsu06g00561 882 PRINTS Carboxypeptidase C serine protease (S10) family signature 849 862 IPR001563 GO:0004185|GO:0006508
Tsu06g00561 882 Pfam Serine carboxypeptidase 740 878 IPR001563 GO:0004185|GO:0006508
Tsu06g00561 882 Pfam Serine carboxypeptidase 494 733 IPR001563 GO:0004185|GO:0006508
Tsu06g00561 882 Pfam Serine carboxypeptidase 42 471 IPR001563 GO:0004185|GO:0006508
Tsu06g00561 882 PANTHER PEPTIDASE S10, SERINE CARBOXYPEPTIDASE, ALPHA/BETA HYDROLASE-RELATED 478 737 - -
Tsu06g00561 882 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 478 737 IPR001563 GO:0004185|GO:0006508
Tsu06g00561 882 Gene3D alpha/beta hydrolase 34 478 IPR029058 -
Tsu06g00561 882 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 737 881 IPR001563 GO:0004185|GO:0006508
Tsu06g00561 882 PANTHER PEPTIDASE S10, SERINE CARBOXYPEPTIDASE, ALPHA/BETA HYDROLASE-RELATED 15 474 - -
Tsu06g00561 882 SUPERFAMILY alpha/beta-Hydrolases 41 474 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00561 Tsu-Chr6 4814575 4847325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00561 749 882 Calmodulin-binding Proteins AT2G22960 61.481 8.34e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00561 K16296 - sly:101252078 956.051