Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00554 ATGAGTAATTCAAATCTTGTTAATCCTTCTTCTTGTTATGGTGATTCATGGGAAGAACAAGCTTTTGCTGAAGATGCAGCTGGAGCTTCACTTGGTGGATGTATATGGCCACCAAGATCATATTCTTGTAGCTTTTGTAGAAGAGAGTTTAGATCAGCACAAGCATTAGGTGGTCATATGAATGTTCATAGAAAAGATAGAGCAAGATTAAAAGAATCTTCTAGTccacaaaatgaaaaaattctttatcatcatcatcatgatcttGAAAATCAACTTCAAAAGCCAATTATTCAAAGTGTTAATTCTTTGGCTTATAATAACTTATTCCCTAATTCTCCTCTTTGTGGTTTGGTTTATAAAACTAACCCTAATTATGATCTTGATCATTTTGTTGCTTCAACTTCATCACCCTCACCTTCTAAAGCTTTATTAAGAGATGAAACCCTAATTCCATTTTATGATTCTTCTATTCCTCATAAAATGATTTCTCCTCATAATTCTTCTGAATCGTGGCGAAATTTATCTGCAGATGATAGATTATGCTCAACAAATTTTCAACTTGAAGTTGAAAATATTGATGAAAAAGTCTCTAAGGGAATTATGGATTCTACGTTTAGAGGTAAAGGCggtaataatgatgatgatgaaagtgATGTAGCTATGAGCTTGAATTTGGTTTTGTGTAGAACTCATCCATTTGTAGAATTTGAAAGTACTAAGGAGGAGGAAGATGATTTAAATTGcaagaagaggaagaaaataGATTCTTCCACAAATCTATTATTCTCAAAGTCAAGCTCTTTTGATAGACAACAACTTATGCAAGCAAACATGTTTGAGTTTAGCCCTAATTCCATTGAAGAAGTAGATCTGGAGTTAAGACTTGGTTCAAAGTCCAAGGTATAG 909 0.3036 MSNSNLVNPSSCYGDSWEEQAFAEDAAGASLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRKDRARLKESSSPQNEKILYHHHHDLENQLQKPIIQSVNSLAYNNLFPNSPLCGLVYKTNPNYDLDHFVASTSSPSPSKALLRDETLIPFYDSSIPHKMISPHNSSESWRNLSADDRLCSTNFQLEVENIDEKVSKGIMDSTFRGKGGNNDDDESDVAMSLNLVLCRTHPFVEFESTKEEEDDLNCKKRKKIDSSTNLLFSKSSSFDRQQLMQANMFEFSPNSIEEVDLELRLGSKSKV 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00554 302 PANTHER OS07G0101800 PROTEIN 3 301 - -
Tsu06g00554 302 SUPERFAMILY beta-beta-alpha zinc fingers 38 67 IPR036236 -
Tsu06g00554 302 Pfam C2H2-type zinc finger 41 65 - -
Tsu06g00554 302 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Tsu06g00554 302 Gene3D Classic Zinc Finger 38 97 - -
Tsu06g00554 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Tsu06g00554 302 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 3 301 - -
Tsu06g00554 302 SMART c2h2final6 41 63 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00554 Tsu-Chr6 4746525 4747433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00554 16 73 C2H2 Transcription Factor Family AT2G37740 77.586 1.98e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu06g00554 zf-C2H2_6 1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00554 - - mtr:MTR_4g021270 410.223