Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00543 ATGTCTTCCTTCACTTCCTCCTCAAAAAGGCGCCACAAACTTAAATCCACATCTACTAGTAgtactactactagtactaaTCCAAAGAGAAAGAGGTACAATGTGTACTTGAGTTTCTGTGATGAAGATGCGACTTCTTTTGCTACGGGTATCTATACGGCTCTTAATAGAAAAGCTCGATTTGATGTTTTCTGGGACGATAAGAAGCTTGGAAGTGGAGATCAAGAAATACCAACCTCAGTGCTGAATGTTATAGGAAATTGCAAAGTTGCTGTAATCGTGTTTTCAAGAAATTATGTTAATTCAAGATCGTGTATTCaagaatttgagaaaataactgAGTGCTGCCTAACCACAGGTGGTCTTATTGTTCTGCCTGTGCTCTATGATGGTCTCAATCATTATTCCGCAATCGGAACAAGTGGAGAGGCTTTTCATGATTTTGTGGATAGAATCTGGATAAAGGAAAAGGAAACTTCCTCTGAAGAGGAAGATAAGTTCATGACTTGGGTGGCAGCAATCACTAGAGCTACCACATATTCAGGACTGATTGATTTCGCAGACAGTTATGGAAGGGAATATATTGAGGATGTAGTTGAAACTGTTACTCGTGcggtaaaaaagaaaagagactTGTTGGGTGTTTTCTATACAGTGAGTGTAAAATCCAGTGTGCAAGATGTGATTCAACTATTGAAACAATCAAGATGTCCTCTCCTACTAGGGATATGGGGGATGGCAGGGATTGGCAAATCAACCATTGCGGAAGCCATTTATAATCGGATTGGTCCCTATTTTGAGCACAAGTACTTGCTCGATAATGTCAGGGAATTTTGGAAAAAAGATGGAGGTCCAGTTTCTTTACAAAAGAAACTTCTTTCTTTCAGGGGCATACCAACTGAAATGCAAATAGGTACAATTGAATCAggaaaagttattttaaaagaaagactTCAACATAAAAGAGTACTTCTTGTACTCGACAATGTTGATAAATTGGAGCAGCTAAAGTCATTGTGCGGAAATTGGGATTGGTTTGGTCCAGGTAGCAAAATAATCATCACAACTAGAGATAGGCATCTACTCAAGGAGCATGGAGTTGACCATATATATAGAGTGAAAGAATTGGAAGAAAGTGAATCGACTGAGCTTTTTAATCAGGGTGCATTCAGCCAAGCAACAACTCCTCATGAAGGTTTTGGCGAACTTTCTAGACAATTAGTTACTTATTCTAGGGGATTGCCTATTGCTCTTAAAGCCCTTGGAGGGTTTTTACATGGAAAGGAAGTACTTGAGTGGAAAGGTGTGTGGAGCAGTCTTGAAAGATTTTCCTTTCCTAATCACGAAGTACTACAAGCTCTGGAAACGAGTTTTGATGATTTGAGCGATGAAGAGAAACAAATATTCCTTGATATAGCATGTTTCTTTAACGGGATGGACAAAAATGACGTACTCCATACATTAAATAGGTCAACACAATGCACAGATCTTCAAATAAGTCTCCTTGAAGACAAGAGCCTTTTAACCATTGATGAGAATAACAAGCTTCAAATGCATGTTCTACTACAAGCCATGGCAAAATATATCATTAAGAGGGAATCAAGTAATAAGACTGATCAGCCAGAGATGTACGATGTGTTCTTGAGTTTTAGAGGGGAAGACAGTCGTGCAAAGTTCATGTCACATCTCTACTCCTCTCTTCAAAATGCGGGGATTCATGTTTTCAGAGACGATGATGATATTCAACGAGGAGATCAGATCTCGATCTCACTGTTGCGAGCAATTGGACAATCTAGAATTTCTATCATTATTTTGTCTACAAATTATGCTAATTCCAGATGGTGTATGCTAGAGTTGGTGAAGATAATGGAAATTGGTAGAACCAGGGGTCTGGCGGTTATGCCCGTGTTCTATGATGTAAATCCCTCAGAAGTACGTCATCAGGATGGTCAGTTTGGAAAAGCTTTTAAAGATCTTATCTCAACAATCTCAGTGGATGAATCCACAAAGAGTAATTGGAGAAGAGACCTCATTGATATTGGTGGCATAGCAGGGTTTGTACTTATAGATTCCAGGAATGAAAGTGCAGATATCAAGAATATTGTTGAACATGTCACCCGTTTGCTCGATAGGACCGAGTTATTTGTTGCTGAACATCCGGTGGGTGTAGAATCTCGCGTGGAAGCTGCGACTAAGCTACTAAACATCCAAAAATCAGATGTTTTACTTCTAGGAATATGGGGAATGGGAGGTGTGGGTAAAACAACCATTGCCAAATCGATTTATAATCAAATTGGGAGCAAATTTGAGGGAAGGAGCTTCATTCTGAATATAAGAGAATTTTGGGAGACAAATAATAATCTAGTTTCTCTACAGCAACAGGTACTTTGTGATGTTTACAGAACCACGACATTCAAGATACGCGACATAGAATCAGGGAAAAATATATTCAAGGAAAGACTTGCCCAGAGTAGGGTACTTGTTGTGCTTGATGATGTGAATGAATTGGACCAAGTAAAGGCCTTGTGTGGAAGCCGCGAATGGTTTGGTCCAGGGAGTAGAATAATCATCACCACAAGAGATAAGCATCTTCTTAGATCGTGTAGTGTTGATCAAGTGTATACAATAGAAGAAATGGGCAAATGTGAATCTCTTGAGCTTTTCAGTTGGCATGCATTCAAGCAGCCAAGTCCGACAAAAGCTTTTGCTGCACATTCAGCAGATGTGATTGCTTATTCTGGGAGATTGCCACTAGCACTTCAAGTCCTTGGGTCCTATTTGTCGGACTGTGAAATAACAGAGTGGCATAAAGTTTTGGACAAACTCAAATGTATACCCCATGATGAAGTACATAAGAAGCTAAAAGTAAGCTTTGATGGTTTAAAAGATGTTACAGAGAAACAAATATTCCTCGATATAGCCTGTTTCTTTATTGGGATGGACAAAAATGATGTCATACAAATATTAAACGGGTCTGGGTTTTTTCCTGATATTGGAATTAAAGTCCTTATAGAGCGGACCCTTGTAACTGTTGACCATAGGAACAAGCTTAGAATGCATGAGTTGTTGAGAGACATGGGAAGACAGATAGTTTATGAGGAATCACCGTTTGATCCTGAGAAGCGCAGTAGGTTGTGGCGGCGTGAGGAAGTGTTCGATATATTATCAAAGCATAAGGGAACAGAAGCTGTCAAGGGATTGGCTTTAGAGTTTCCAAGGGAAAATACTGCTTGTCTGAATACCAAAGCATTTAAGAAGATGAATAAACTTAGATTGCTTCGACTTTCCGGGGTTCAGCTTCATggagattttaaatatctttcCGAGGATCTTAGATGGCTGTACTGGCATGGGTTTCCATCAACTTACACGCCTACAGAATTTCAGCAAGGAAGTCTAGTTTCCATCGAATTAAAATATAGTAATCTCAAACAATTATGGAAGAAGAGCCTGATACTAGAGAATCTAAAAATTCTTAATCTTAGTCATTCTCGGGATTTGTCTGAAACCCCAGACTTTTCATTCTTGCCTAATCTTGAAAAGCTAGTACTCAAAGACTGTCCAAGTTTGTCTGCAGTCTCCCATAGCATTGGATCTCTCCATAAACTTCTTCTGATAAATTTGACAGACTGCACAGGGCTTCGGAAACTTCCGAAAAGCATCTATAAGTTAAAATCTCTAGAATCTTTGATTCTTTCAGGATGTTCCATGATTGACAAACTGGAGGAGGACTTGGAACAGATGGAATCCTTGAAAACCTTGATTGCGGATAAGACTGCTATAACAAAAGTGCCCTTTTCAATAGTAAGATTAAAAAACATTGGATATATTTCTATATGTGGCTTTGAAGGATTTTCACGTGATGTATTTCCTTCTCTCATTCGGTTTTGGTTGTCTCCATCAAGTAATGTGATATCCCTAGTTCAAACATGTACATCTATGTCATCTCTTGGTACTTTCAAGGACCTTCTTAAGCTTCGAAGTCTTTGTGTGGAGTGTGGCTCAAAATTCCAACTAACTCATGATGTAGCAATAATTTTGGATGCATTAAAAGCCACAATTTTTCATAAATATGAAGCAAATGCATGTGCAAGTACATCACAATTCTCTGATATGTATGTTTCTCCTTTAATTGATGATTGCCTTGGTCAAGTTCCCATTTCAGGGTCAAATAATTACTTGAAATCTCTCTTAATTCAAATGGGAACGAAATGCCAAGTCTCTAATATTACTGAAGACATAATTTTTCAGGCTGCAGATGGGTCTTTGGGTTCGTTTATGCCCCCCTCAAACAATAAATCTGATTGGTTTACCTTTAGTTGCAAAGGTTGTTCTGTAACATTTGATGTCCCAACAATGAAGGAGAATAATCTCAAGAGTATGCTGTTGTTTGTCACCTATTACTCTTCCCCTGACAACATAACATCAGAATGTTGCCAAGGTGTGTTGATCATAAATTACACAAAGACAACCATTCACGCCTATAAAAGAGATACACTAACCTCTTTTGGCCATGAGGATTGGCAGACCATAATATCAAATCTAGAACCAGGTAACAAAGTAGAGGTTATGGTTGTTTTTGGGGAGGGATTCATTGTAGAGAAGACAACACTATCTCTCTTATATGATGAACCAATCAACAAAGAATTGAAACACTGTAAGGCAGTAGATGAGGAGGATGTTATTGTTTCTAGTGGCGGTAATATTGATATGCCAGCAGACAACAATGTTACTGGTCCACAGCAAGATGAAAATGAAAGTGAAGATGAGCACGGACATGAAATGTGTAGAAAAAGAGAGGAGACAATACAAGGTTAG 4818 0.3802 MSSFTSSSKRRHKLKSTSTSSTTTSTNPKRKRYNVYLSFCDEDATSFATGIYTALNRKARFDVFWDDKKLGSGDQEIPTSVLNVIGNCKVAVIVFSRNYVNSRSCIQEFEKITECCLTTGGLIVLPVLYDGLNHYSAIGTSGEAFHDFVDRIWIKEKETSSEEEDKFMTWVAAITRATTYSGLIDFADSYGREYIEDVVETVTRAVKKKRDLLGVFYTVSVKSSVQDVIQLLKQSRCPLLLGIWGMAGIGKSTIAEAIYNRIGPYFEHKYLLDNVREFWKKDGGPVSLQKKLLSFRGIPTEMQIGTIESGKVILKERLQHKRVLLVLDNVDKLEQLKSLCGNWDWFGPGSKIIITTRDRHLLKEHGVDHIYRVKELEESESTELFNQGAFSQATTPHEGFGELSRQLVTYSRGLPIALKALGGFLHGKEVLEWKGVWSSLERFSFPNHEVLQALETSFDDLSDEEKQIFLDIACFFNGMDKNDVLHTLNRSTQCTDLQISLLEDKSLLTIDENNKLQMHVLLQAMAKYIIKRESSNKTDQPEMYDVFLSFRGEDSRAKFMSHLYSSLQNAGIHVFRDDDDIQRGDQISISLLRAIGQSRISIIILSTNYANSRWCMLELVKIMEIGRTRGLAVMPVFYDVNPSEVRHQDGQFGKAFKDLISTISVDESTKSNWRRDLIDIGGIAGFVLIDSRNESADIKNIVEHVTRLLDRTELFVAEHPVGVESRVEAATKLLNIQKSDVLLLGIWGMGGVGKTTIAKSIYNQIGSKFEGRSFILNIREFWETNNNLVSLQQQVLCDVYRTTTFKIRDIESGKNIFKERLAQSRVLVVLDDVNELDQVKALCGSREWFGPGSRIIITTRDKHLLRSCSVDQVYTIEEMGKCESLELFSWHAFKQPSPTKAFAAHSADVIAYSGRLPLALQVLGSYLSDCEITEWHKVLDKLKCIPHDEVHKKLKVSFDGLKDVTEKQIFLDIACFFIGMDKNDVIQILNGSGFFPDIGIKVLIERTLVTVDHRNKLRMHELLRDMGRQIVYEESPFDPEKRSRLWRREEVFDILSKHKGTEAVKGLALEFPRENTACLNTKAFKKMNKLRLLRLSGVQLHGDFKYLSEDLRWLYWHGFPSTYTPTEFQQGSLVSIELKYSNLKQLWKKSLILENLKILNLSHSRDLSETPDFSFLPNLEKLVLKDCPSLSAVSHSIGSLHKLLLINLTDCTGLRKLPKSIYKLKSLESLILSGCSMIDKLEEDLEQMESLKTLIADKTAITKVPFSIVRLKNIGYISICGFEGFSRDVFPSLIRFWLSPSSNVISLVQTCTSMSSLGTFKDLLKLRSLCVECGSKFQLTHDVAIILDALKATIFHKYEANACASTSQFSDMYVSPLIDDCLGQVPISGSNNYLKSLLIQMGTKCQVSNITEDIIFQAADGSLGSFMPPSNNKSDWFTFSCKGCSVTFDVPTMKENNLKSMLLFVTYYSSPDNITSECCQGVLIINYTKTTIHAYKRDTLTSFGHEDWQTIISNLEPGNKVEVMVVFGEGFIVEKTTLSLLYDEPINKELKHCKAVDEEDVIVSSGGNIDMPADNNVTGPQQDENESEDEHGHEMCRKREETIQG 1605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00543 1605 SMART AAA_5 237 376 IPR003593 -
Tsu06g00543 1605 SMART AAA_5 740 877 IPR003593 -
Tsu06g00543 1605 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 182 IPR035897 -
Tsu06g00543 1605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 472 IPR027417 -
Tsu06g00543 1605 Gene3D - 26 207 IPR035897 -
Tsu06g00543 1605 MobiDBLite consensus disorder prediction 1 28 - -
Tsu06g00543 1605 Gene3D - 538 716 IPR035897 -
Tsu06g00543 1605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 707 973 IPR027417 -
Tsu06g00543 1605 Coils Coil 1238 1258 - -
Tsu06g00543 1605 ProSiteProfiles TIR domain profile. 31 160 IPR000157 GO:0007165
Tsu06g00543 1605 Gene3D Ribonuclease Inhibitor 1063 1414 IPR032675 -
Tsu06g00543 1605 Gene3D - 717 876 IPR027417 -
Tsu06g00543 1605 Pfam NB-ARC domain 223 446 IPR002182 GO:0043531
Tsu06g00543 1605 Pfam NB-ARC domain 727 948 IPR002182 GO:0043531
Tsu06g00543 1605 MobiDBLite consensus disorder prediction 1584 1605 - -
Tsu06g00543 1605 SUPERFAMILY "Winged helix" DNA-binding domain 449 534 IPR036390 -
Tsu06g00543 1605 Gene3D - 375 462 IPR042197 -
Tsu06g00543 1605 Gene3D - 879 962 IPR042197 -
Tsu06g00543 1605 ProSiteProfiles TIR domain profile. 542 691 IPR000157 GO:0007165
Tsu06g00543 1605 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 552 1542 - -
Tsu06g00543 1605 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 40 536 - -
Tsu06g00543 1605 Pfam TIR domain 544 706 IPR000157 GO:0007165
Tsu06g00543 1605 Pfam TIR domain 33 151 IPR000157 GO:0007165
Tsu06g00543 1605 SUPERFAMILY Toll/Interleukin receptor TIR domain 535 682 IPR035897 -
Tsu06g00543 1605 PRINTS Disease resistance protein signature 820 834 - -
Tsu06g00543 1605 PRINTS Disease resistance protein signature 913 927 - -
Tsu06g00543 1605 PRINTS Disease resistance protein signature 743 758 - -
Tsu06g00543 1605 PRINTS Disease resistance protein signature 1151 1167 - -
Tsu06g00543 1605 Gene3D - 208 369 IPR027417 -
Tsu06g00543 1605 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 552 1542 IPR044974 GO:0006952
Tsu06g00543 1605 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40 536 IPR044974 GO:0006952
Tsu06g00543 1605 MobiDBLite consensus disorder prediction 1565 1605 - -
Tsu06g00543 1605 SUPERFAMILY L domain-like 1018 1332 - -
Tsu06g00543 1605 SMART till_3 32 177 IPR000157 GO:0007165
Tsu06g00543 1605 SMART till_3 543 683 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00543 Tsu-Chr6 4599536 4638593 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00543 82 537 WRKY Transcription Factor Family AT4G12020 29.032 3.16e-39 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00543 - - cam:101511908 2328.52