Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00540 atggcTTTGTACCGCATTCACTGCCACCTTAATCTCCCATTCCCCTCCAATGCGCCCCGTATATCTCACTCTTctcctcctccttctctcttctcaACACCAACTAAAAAGATCCCTTCTTTTTCAACTGTTCCGCGCCGCTCctttcaaacaacaacaacagtgAAGTCTTCCATGACAATGGAGGATAAACCTCTCTCTCAAAACAATCGCATGCTTGTGTATGTGCCTGCTCATCCTTTGATCAAGCACTGGGTTTCGGTACTGAGGAATGAGCAAACTCCTGTTCCTATCTTTAGAAATGCAATGGCTGAGTTGGGAAGGCtactaatatatgaagcctcaAGGGATTGGTTGCCAACTGTGTCTGGAGAGATTCAATCACCGCTGGGTGTCGCCTCAGTGGAGTTCATTGATCCAAGAGAGCCTGTAGCTGTTATTCCAATCTTGAGAGCTGGTCTTGCTCTTGCTGAACATGCAGCATCAATCTTGCCTGCAACAAAAACATATCATCTAGGTATAAGCAGAAATGAAGAAACTCTTCAACCAACTATATATTTGAACAAGCTACCTGAGAAATTTGCAGAAGGATCTAAAGTATTTGTGGTTGATCCTATGCTGGCAACAGGTGGTACTATAGTGGCTGCCTTGAATCTCTTAAAGGAACGTGGAGTTGGCAACAAGCAGATCAAAGTGATATCTGCATGTTCTTCCCCTCCGGCTCTTGAAAAGCTGAGCGAGCAGTTCCCAGGGCTTCATGTGTATACTGGAATAATTGATCCTACTGTTAATGACAAAGGGTTTATAATTCCTGGCCTTGGAGATGCTGGCGATCGCAGCTATGGTACATGA 852 0.4131 MALYRIHCHLNLPFPSNAPRISHSSPPPSLFSTPTKKIPSFSTVPRRSFQTTTTVKSSMTMEDKPLSQNNRMLVYVPAHPLIKHWVSVLRNEQTPVPIFRNAMAELGRLLIYEASRDWLPTVSGEIQSPLGVASVEFIDPREPVAVIPILRAGLALAEHAASILPATKTYHLGISRNEETLQPTIYLNKLPEKFAEGSKVFVVDPMLATGGTIVAALNLLKERGVGNKQIKVISACSSPPALEKLSEQFPGLHVYTGIIDPTVNDKGFIIPGLGDAGDRSYGT 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00540 283 CDD PRTases_typeI 139 259 IPR000836 -
Tsu06g00540 283 Pfam Uracil phosphoribosyltransferase 76 283 - -
Tsu06g00540 283 PANTHER URIDINE KINASE 53 279 - -
Tsu06g00540 283 MobiDBLite consensus disorder prediction 17 37 - -
Tsu06g00540 283 SUPERFAMILY PRTase-like 74 282 IPR029057 -
Tsu06g00540 283 PANTHER URACIL PHOSPHORIBOSYLTRANSFERASE 2 53 279 - -
Tsu06g00540 283 Gene3D - 60 283 IPR029057 -
Tsu06g00540 283 TIGRFAM upp: uracil phosphoribosyltransferase 74 283 IPR005765 GO:0004845|GO:0006223
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00540 Tsu-Chr6 4557610 4563574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00540 40 283 PRT Gene Family AT3G53900 69.262 3.56e-127 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00540 K00761 - gmx:100797953 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00540 06 4557610 4563574 Tsu06g00540 06 4557610 4563574 ECH