Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00538 ATGGGGGCTCGTTGCTCGAAATTCTCTTTTTGCTGGATCCACTCTCACCTCAATCCTTCCGTTCTTGAATCCTCTGACCAagAAAATGGTGGAAAGAGTGAAAGAAACTTGTGGCCTAGTTTTAGTGAGTACAGTTTGGAAGAATTGAAGGCTGCTACAAATGGATTCTCCTCAGAAAACATAGTTTCTGAGCATGGTGAAAAAGCTCCAAATGTTGTTTACAAAGGGAAACTTGAGAATGGACTATTGATTGCCATCAAACGTTTCAACAAGTTAGCTTGGCCGGATTCTCGGCAATTCATTGAAGAATCTAAACAAGTGGGGAGCCTTAGAAGCGAACGTTTGGcgaatttgattggttgttgctATGAAGGGGATGAGAGGCTGCTAGTGGCAGAGTTTATGCCACATGAAACATTGGCTAAGCATCTCTTTCATTGGGAGGCACAGCCCATGAAATGGGCAATGAGGTTGAGGGTGGCCTACTATTTAGCTCAAGCTCTTGAGTATTGCACTAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTACAGGATCTTGTTTGATCAGGATGGTAATCCCAGGTTATCGTGCTTTGGACTTATGAAGAACAGCAGAGATGGAAAGAGTTATAGTACAAACTTGGCTTTCACTCCTCCTGAGTACTTAAGGACAGGTAGAGTGACAGCAGAGAGTGTGGTTTACAGTTTTGGAACTCTATTGCTTGATCTCTTGAGTGGTAAACATATTCCCCCAAGCCATGCACTTGACCTGATACGCGGGAAAAACTATTTGATGTTGATGGATTCTGCATTAGAAGGTCACTTTTCAAAGGATGATGGAACTGAGTTAGTTCGTTTGGCTTCTCGTTGCTTACAATATGAAGCGCGTGAGAGGCCAAATGCCAAGTCTCTTGTTGAAACTCTTACGTCACTTCAGAAGGAAACAGAGGTTCCCTCACATGTTCTGATGAGTCTCAAGCAAGAAACAGAATCCTCAACAAAGCCATTGTCATTGACACCATTTGGTGAATCATGTTTGAGATTGGATCTTACTGCCATACATGCAATATTAGAGAAGACTGGTTACAAGGATGATGAAGGAATAGCCAATGAGCTTTCCTTTCAATTGTGGACTAGTCAAATGCAAGAGACCTTGAATTTGAAGAAACATGGAGATACTGCTTTTCGAGCTAAGGACTTCGTCACTGCCATTGACTGCTACACAAAAGTAAGAGAATGTTGGGACTCTGTTcagataaacaacttaattaaacgCTTATATCATAAGTGCTTATAA 1302 0.4063 MGARCSKFSFCWIHSHLNPSVLESSDQENGGKSERNLWPSFSEYSLEELKAATNGFSSENIVSEHGEKAPNVVYKGKLENGLLIAIKRFNKLAWPDSRQFIEESKQVGSLRSERLANLIGCCYEGDERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAYYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNYLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVETLTSLQKETEVPSHVLMSLKQETESSTKPLSLTPFGESCLRLDLTAIHAILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAIDCYTKVRECWDSVQINNLIKRLYHKCL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00538 433 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Tsu06g00538 433 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Tsu06g00538 433 SUPERFAMILY Protein kinase-like (PK-like) 34 321 IPR011009 -
Tsu06g00538 433 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00538 433 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 412 - -
Tsu06g00538 433 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Tsu06g00538 433 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 412 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00538 Tsu-Chr6 4546119 4549363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00538 18 313 Glycoside Hydrolase AT3G07070 33.333 1.76e-42 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Tsu06g00538 PK_Tyr_Ser-Thr 7.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00538 - - gmx:100814477 772.311