Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00515 aTGGCTAGTGATGAGGGTTTTGAAGGTTACCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTTGTTGTGGCTCAAAACCAATCTCATGAACCTTTACTTCCTTTTTatgattcttcttctttcattacTAATTTTAACCAACAACAAGGTTTGAAACAAaattcttgttcttcttctaaTTCTATGAAGGATTTAGAATGTTCTAATTTGATGATGCGATTTTCAAGAGAAGAAGGAAAAAGGGTAATGAATAATATTTCTTCTTctactactactaataataataactctTGTTCTATTTCTCATCATCCTTATTTTGAAACTTCGaatcataataataatcaaggaaataataacaataataatattaataacccTTTTTTCTATCAAGCACAAAACATTCAAAATCTTAGAAATTTTGATGAACAACAACATAGTAGTACTAGTACTATGATGTTGAATAATCATGAACCTTTGTCTTTGTCACTTTCATCAAATAAAAGTGTTAGTAGTAATTTACCTTTGGAGTTGAATCTACAAAGATATGGATCTATGATTTATGGTGGTGGAAGTATGATTCAAGGGTTAGTTGAAGGTGGTGGTGGAGGAAGTGGTGGTTCAGTTCCATTTACAGGTTATGCTTCAGTTTTGAAGGATTCTAGGTTTTTGAAACCAGCTCAAGAATTGTTGGAAGAGATTTGTGATGTTGGAGGAAGAGGTTTTTGTAGTGAAAAGATTGTTGTTTTGGCTGATTCATCTTTGATGATGGAATCACCTTTGGAAAGATTGAGTGAAGAAGATCCATTTGGTGATGATGGTCGAAATAAGTCAAGATTATTGACTATGCTTGATgagGTTTACAAGAGGTACAGGCAATACTACCAACAGATGCAATCGGTAGTAACATCATTTGAGTATGTTTCGGGCCTCAACAATGCAGCTCCTTATGCAAGTTTGGCGATAAAAGCCATGTCGAAACATTTTCGGTGCTTGAAGAAGGCGATTACTGATCAGCTTCAGTACTCCAATAAGGCTCATTTTCACACAAGCAATAGGAAGGATGAATCTCCAAGATTCGGCAATAGTGAAAGAGGAGGTCCTTACGGCCATAGGACAGGTTTTCTTGAGCAACAACAACCTGTGTGGCGACCTCAAAGAGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCTTGGCTTTTTGAGCACTTTTTGCATCCCTATCCTACTGATACAGACAAGATAATGTTGGCTAAACAAACCGGTCTGTCACGTAGCCAAGTGTCTAATTGGTTCATAAATGCAAGAGTAAGACTTTGGAAACCAATGGTAGAAGAAATACACATGCTAGAAACAAGGCAAATTCCAAAAGAATCACAAAATGAAGAAAGTTCAAGGAACAAATCAAGTGATCATCACAATTTGCCTTCGGATACATCTCTACTTTCCGATAATCCATCGACCTCAACAGATAAGTTTCAAGACGTTGCTTATAAGCGTGCGGTAAACGAAATTCCGAACATACCAATTAGAAGTCAAGCACAACAacaccatcaacaacaacaaatgaaTCTACCTTTTCAACAAGTTGGTGTTGGAATGAACATAGGCAGTGgaagcaacaacaacaataataatagtaatagtaatgtTTCATTGACATTAGGACTTTATCAAAATCATGGAATTGGTTTAGCTGAACCATTTCCATTAAGTGCTGCTCAAAGATTTGGTCTTGGACTTGAAACCAATAATGAAGGTTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGTAGAGATGTTATTGGAGGTCAAATGTTTCATGACTTTGTAGGATGA 1854 0.3366 MASDEGFEGYHVPQQSRRDKLRVVVAQNQSHEPLLPFYDSSSFITNFNQQQGLKQNSCSSSNSMKDLECSNLMMRFSREEGKRVMNNISSSTTTNNNNSCSISHHPYFETSNHNNNQGNNNNNNINNPFFYQAQNIQNLRNFDEQQHSSTSTMMLNNHEPLSLSLSSNKSVSSNLPLELNLQRYGSMIYGGGSMIQGLVEGGGGGSGGSVPFTGYASVLKDSRFLKPAQELLEEICDVGGRGFCSEKIVVLADSSLMMESPLERLSEEDPFGDDGRNKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKAMSKHFRCLKKAITDQLQYSNKAHFHTSNRKDESPRFGNSERGGPYGHRTGFLEQQQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQIPKESQNEESSRNKSSDHHNLPSDTSLLSDNPSTSTDKFQDVAYKRAVNEIPNIPIRSQAQQHHQQQQMNLPFQQVGVGMNIGSGSNNNNNNSNSNVSLTLGLYQNHGIGLAEPFPLSAAQRFGLGLETNNEGYVMSGFESQNRHFGRDVIGGQMFHDFVG 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00515 617 Gene3D - 387 449 - -
Tsu06g00515 617 Pfam Homeobox KN domain 401 440 IPR008422 GO:0003677|GO:0006355
Tsu06g00515 617 SMART prehox3 213 339 IPR006563 -
Tsu06g00515 617 Pfam Associated with HOX 218 338 IPR006563 -
Tsu06g00515 617 MobiDBLite consensus disorder prediction 453 492 - -
Tsu06g00515 617 SUPERFAMILY Homeodomain-like 386 451 IPR009057 -
Tsu06g00515 617 SMART HOX_1 384 448 IPR001356 GO:0003677
Tsu06g00515 617 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 26 591 - -
Tsu06g00515 617 MobiDBLite consensus disorder prediction 476 492 - -
Tsu06g00515 617 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 26 591 - -
Tsu06g00515 617 MobiDBLite consensus disorder prediction 348 369 - -
Tsu06g00515 617 MobiDBLite consensus disorder prediction 453 475 - -
Tsu06g00515 617 CDD homeodomain 384 445 IPR001356 GO:0003677
Tsu06g00515 617 ProSiteProfiles 'Homeobox' domain profile. 381 444 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00515 Tsu-Chr6 4309931 4314696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00515 149 617 Homeobox Transcription Factor Family AT5G02030 48.185 1.28e-115 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tsu06g00515 POX 1.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00515 - - cam:101498314 889.412