Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00512 ATGGAACCAGAAGAACCTACCGTTACGGCGGTCCAAGCTTTAAGCAGCGACGAAGCTTTACTCGCATTAGGTGGTGAAGATGATGCCAGCAACGGTAACAAAGTTAAAGGACCTTGGTCTCCTGAAGAAGACGCCGTTCTCAGCCGTCTTGTTAGTCAGTTCGGTGCTAGAAATTGGAGTCTCATCGCTCGTGGAATCGCTGGAAGATCCGGTAAGTCGTGTCGACTCCGGTGGTGTAATCAACTTGACCCTGCTGTTAAACGCAAGCCCTTCACTGATGAGGAGGACCGGGCTATAGTTGCTGCTCATGCAATCCATGGAAACAAATGGGCAGCCATCGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAAGAACCACTGGAACTCTACTTTGAGGCGTCGGGGAATTGATCAGATTAGGTTAGAATCTGGTATCATGGTGGAAGCCAAAGCATCATCAGAAGAAACTCTATCATGTGGAGATGTTAATTCTTTGAAATCCTCAGAAGGAAGAGATGTTAGCTCTATGGAGATTGTGGCTGATAAATATGAAGGCAATGCAAGGACTGATGCTCAACTATACCATGAAGTCAGGGATCCTCCGACCCTTTTTAAGCCTGTAGCACGTGTAAGTGCTTTTAACGTTTACAACACTTTCAATGGTTCACAGCCTTCAACATCAGTTCCAAGACCTGTTCCAATGCAAGGACCTATTTTACATCCGCCAAAATCAGATACGGAAATTTGTAAAATGCTCAACAGAACTATTGGTGACCGGTCGGTGCCTAACCAGTGTGGTCATGGATGCTGTTCTTCTGTAAATGGTAACAGCTCAAAAATCTCTCTGTTGGGACCAGAATTCGTTGAGTATTCAGAACCTCAGTCTTTCCCAAGTTTTGAGCTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAATAGTAGTGTCAAAATGATGGGTGATAATGCTGGCAGGGTTAATATGTAA 1014 0.4497 MEPEEPTVTAVQALSSDEALLALGGEDDASNGNKVKGPWSPEEDAVLSRLVSQFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRAIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGIDQIRLESGIMVEAKASSEETLSCGDVNSLKSSEGRDVSSMEIVADKYEGNARTDAQLYHEVRDPPTLFKPVARVSAFNVYNTFNGSQPSTSVPRPVPMQGPILHPPKSDTEICKMLNRTIGDRSVPNQCGHGCCSSVNGNSSKISLLGPEFVEYSEPQSFPSFELAAIATDISNLAWLKSGLENSSVKMMGDNAGRVNM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00512 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Tsu06g00512 337 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Tsu06g00512 337 SMART sant 35 84 IPR001005 -
Tsu06g00512 337 SMART sant 87 135 IPR001005 -
Tsu06g00512 337 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Tsu06g00512 337 CDD SANT 38 80 IPR001005 -
Tsu06g00512 337 PANTHER MYB PROTEIN-RELATED 14 320 - -
Tsu06g00512 337 Gene3D - 35 87 - -
Tsu06g00512 337 Pfam Myb-like DNA-binding domain 39 97 - -
Tsu06g00512 337 CDD SANT 90 133 IPR001005 -
Tsu06g00512 337 Gene3D - 90 136 - -
Tsu06g00512 337 PANTHER - 14 320 - -
Tsu06g00512 337 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Tsu06g00512 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 82 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00512 Tsu-Chr6 4281927 4287468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00512 33 335 MYB Transcription Factor Family AT3G09230 51.402 1.64e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g00512 Myb_DNA-bind_6 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00512 K09422 - gmx:100813406 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00512 06 4281927 4287468 Tsu06g00512 06 4281927 4287468 ECH