Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00410 ATGTGTTCTCAAAACCATGATCAACATGAGTATGAAGCATGTTTTTTAGAGAATGGAGGAAACATAAAGGGAAGTATGAAACATGGTAGAACAGCACATAACATGTCATCATCTTCATTGCGCAAGAAATCTGACATAATTCTTGTCTCAAAAGTTCACTATGGAATCATTAGAAATCTTTTGGCTAATTTCCAAGAAGTTATTCTTGGAACAAAGCTTTCTATTCTTTTTCCAACCATTCCTTTTGCCATTTTAGCTCAATGCTATGGTTTTGCAAGACCTTGGGTTTTTGCATTGAGCTTACTTGGTCTTATCCCTCTTGCTGAAAGAGTCAGCTTCTTGACAGAACAGATAGCTTATTACACAGGTCCCACAGTGGGAGGACTTTTGAATGCAACATGTGGGAATGCTACAGAACTCATCATTGCAATATTTGCACTTAGCAATAACAAAATTGCTGTAGTAAAATATTCTCTCCTTGGTTCCATTCTCTCCAaccttcttcttgttcttggaACCTCTCTTTTATGTGGTGGCATTGCGAATATTAGAGCAGAACAAAAATATGACAGAAGACAATCAGATATGAACTTGCTTATGCTTCTTATGGCATTGTTGTGTCAATTACTGCCAATGTTGTTTCAATATGGTGGTGCATCTGTGGCTTTCGATGCAGACTCATCTCTACAATTTTCAAGAGCTGCTAGCATTTTGATGGTGATTGCATATTTTGCATATCTTATCTTCCAACTATGGACTCACCGGCAATTATTTGAAGCACAAGatGAAAATGATGAAGCGGGTGAAGATGATTTGGTAGAAGCAGTTATAGGGTTTCCGAGTGGTTTTGCTTGGCTGGTTATTATGACTGTGTTCATTGCGATTTTGTCTGAATATGTGGTTGACACAATTGAGGATGCATCGGACTCATGGGGTCTATCTGTCAGCTTCCTCAGCATAATCATGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATTATATTTGCTTTCAAGAACAAACTGGACATCACTTTGGGTGTTGCTTTGGGTTCTGCAACTCAAATTGGAATGTTTGTGGTTCCTCTATGTGTAATTGTTGCTTGGATTCTTGGTATCAAAATGGACCTAAATTTCAACCTCCTAGAAACAGGTTCTCTTGCTTTGGCAATAATAACTACAGGCTTTACATTACAGGATGGAACTTCTCACTACTTGAAAGGCCTTATTCTCTTGCTCTTATACATTGTTATTGGGGCATGCTTTTTTGTACAGAGAATACCCTCCGACCATGCTGATACTGCTAACATAATGCTTCATTCAGCAACTGATGCCAATTTTAGAGCTTAA 1356 0.3791 MCSQNHDQHEYEACFLENGGNIKGSMKHGRTAHNMSSSSLRKKSDIILVSKVHYGIIRNLLANFQEVILGTKLSILFPTIPFAILAQCYGFARPWVFALSLLGLIPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATELIIAIFALSNNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANIRAEQKYDRRQSDMNLLMLLMALLCQLLPMLFQYGGASVAFDADSSLQFSRAASILMVIAYFAYLIFQLWTHRQLFEAQDENDEAGEDDLVEAVIGFPSGFAWLVIMTVFIAILSEYVVDTIEDASDSWGLSVSFLSIIMLPIVGNAAEHAGAIIFAFKNKLDITLGVALGSATQIGMFVVPLCVIVAWILGIKMDLNFNLLETGSLALAIITTGFTLQDGTSHYLKGLILLLLYIVIGACFFVQRIPSDHADTANIMLHSATDANFRA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00410 451 Gene3D - 124 279 IPR044880 -
Tsu06g00410 451 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 15 437 IPR004713 GO:0006812|GO:0008324|GO:0016021
Tsu06g00410 451 TIGRFAM caca2: calcium/proton exchanger 59 425 - -
Tsu06g00410 451 TIGRFAM cax: calcium/proton exchanger 79 425 IPR004798 GO:0006816|GO:0015369
Tsu06g00410 451 Pfam Sodium/calcium exchanger protein 282 420 IPR004837 GO:0016021|GO:0055085
Tsu06g00410 451 Pfam Sodium/calcium exchanger protein 95 252 IPR004837 GO:0016021|GO:0055085
Tsu06g00410 451 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 15 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00410 Tsu-Chr6 3507380 3511505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00410 17 433 Antiporters AT2G38170 69.087 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00410 K07300 - gmx:100782052 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01366 04 13880529 13897344 Tsu06g00410 06 3507380 3511505 PCT