Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00384 ATGGGTGTTGATTACTATAAAGTCCTTCAGATAGATCGTAATGCCAAAGATGATGATCTCAAAAAAGCTTATCGTAAACTTGCCATGAAATGGCACCCTGATAAGAACCCTAATAACAAAAAAGATGCTGAAGCCAAATTCAAGCAAATCTCAGAAGCTTAtgatGTTTTGAGTGATCCACAAAAGAGAGCTGTGTATGATCAATATGGTGAGGAGGGATTGAAGGGGCAGGTGCCACCCCAAGGTGCAGGTGGATTTTCTGATGCCAGTGATGGGCCGACGATGTTCCGGTTCAATCCGAGAAGTGCAGATGACATATTTTCGGAGTTCTTCGGGTTTCAAAGACCTTTTGGTGGTGGAATGGGTGATATGGGTGGTCATCCTGGTGCTTCTGGCTTTCCGAGGGGAATGTTTAGGGATGACATTTTCTCTTCGTTTAGGAATGCGGCTGGTGAAGGATCTGGCAATGCACCGAGGAAAAGTGCACCTATAGAGAGAACATTGCCATGCAATTTGGAGGATTTGTATAAAGGGACCACCAAAAAAATGAAGATTTCCAGGGATGTTTCTGATTCTAGTGGGAGGCCTACCACAGTCGAGGAAATTCTAACCATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCAGAGAAGGGAAATGAACAAAGAGGACTTATACCTGCAGACcttgtttttattattgatgAGAAGCCTCATAGCGTCTTCAAAAGGGACGGCAATGATCTTGTTGTTACTCAGAAGATCTCTCTTGTAGAAGCTCTGACAGGTTACACAGCGCAAATAACAACCCTTGATGGGAGGAATCTCACGGTCCCCGTCAACACCATCATTAGTCCATCGTATGAAGAAGTTGTTAAAGGAGAGGGTATGCCGATTCCCAAGGAACCTTCAAAAAAGGGAAACTTGAGAATCAAGTTCAATGTCAAGTTTCCATCTAGACTTACATCAGAGCAGAAGACCGGCATTAAGCGATTATTGACATCTTCATAG 1023 0.4262 MGVDYYKVLQIDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPQGAGGFSDASDGPTMFRFNPRSADDIFSEFFGFQRPFGGGMGDMGGHPGASGFPRGMFRDDIFSSFRNAAGEGSGNAPRKSAPIERTLPCNLEDLYKGTTKKMKISRDVSDSSGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGLIPADLVFIIDEKPHSVFKRDGNDLVVTQKISLVEALTGYTAQITTLDGRNLTVPVNTIISPSYEEVVKGEGMPIPKEPSKKGNLRIKFNVKFPSRLTSEQKTGIKRLLTSS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00384 340 CDD DnaJ_C 162 325 - -
Tsu06g00384 340 Gene3D - 163 241 - -
Tsu06g00384 340 SUPERFAMILY Chaperone J-domain 3 124 IPR036869 -
Tsu06g00384 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 331 IPR008971 GO:0006457|GO:0051082
Tsu06g00384 340 CDD DnaJ 4 59 IPR001623 -
Tsu06g00384 340 Gene3D - 243 323 - -
Tsu06g00384 340 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Tsu06g00384 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 243 IPR008971 GO:0006457|GO:0051082
Tsu06g00384 340 Pfam DnaJ C terminal domain 164 322 IPR002939 -
Tsu06g00384 340 PRINTS DnaJ domain signature 24 39 IPR001623 -
Tsu06g00384 340 PRINTS DnaJ domain signature 6 24 IPR001623 -
Tsu06g00384 340 PRINTS DnaJ domain signature 42 62 IPR001623 -
Tsu06g00384 340 PRINTS DnaJ domain signature 62 81 IPR001623 -
Tsu06g00384 340 Pfam DnaJ domain 4 67 IPR001623 -
Tsu06g00384 340 MobiDBLite consensus disorder prediction 73 93 - -
Tsu06g00384 340 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 339 - -
Tsu06g00384 340 PANTHER BNAANNG28460D PROTEIN 1 339 - -
Tsu06g00384 340 SMART dnaj_3 3 62 IPR001623 -
Tsu06g00384 340 Gene3D DnaJ domain 3 122 IPR036869 -
Tsu06g00384 340 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00384 Tsu-Chr6 3297597 3300884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00384 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 1.20e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00384 K09510 - nnu:104594898 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00384 06 3297597 3300884 Tsu06g00384 06 3297597 3300884 ECH