Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00383 ATGGAAATGGGGTCAAGTCCTCGCACCGTTGAAGAGATCTTCAAAGATTTCAGTTCTCGTAGAGATGGTATCGTTCGTGCTTTAACTCAAGATGTTGATGAGTTCTACGCACTCTGTGATCCAGataAGGACAACTTGTGTCTCTATGGACATTCAAATGAATCATGGGAAGTGACTCTTCCAGCAGAGGAAGTTCCACCTGAGCTTCCAGAGCCAGCTCTCGGAATCAATTTTGCAAGGGATGGCATGAACCGTAGGGACTGGCTTTCCTTGGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCCGTGGCCTTTTATCTCGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGACCTTCCAACTGTGTTTGAAGTTGTAACTGAGAGGAAGCCAATAAAGGACAAGCCAACTGTAGACAGTGGAAGCAAATCTCGGGGAAGCACCAAGAGATCAAGTGACGGGCAAGTTAAAAGCATCCCAAAGTTGGCAGATGATCAAGGTTATGAGGAAGAGGAAGACGAGCATAGTGAAACCCTTTGCGGGACCTGTGGCGGAAACTACAACGctgatgaattttggattgGATGCGATATATGTGAGAGGTGGTACCACGGGAAATGTGTGAAGATTACTCCTGCAAAAGCCGAGAGCATAAAGCAATACAAGTGCCCATCATGCAGCATGAAGAGAGGCAGGCCCTAA 723 0.455 MEMGSSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHSNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGSTKRSSDGQVKSIPKLADDQGYEEEEDEHSETLCGTCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMKRGRP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00383 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Tsu06g00383 240 CDD PHD_AL_plant 186 236 IPR044104 -
Tsu06g00383 240 Pfam PHD-finger 187 235 IPR019787 -
Tsu06g00383 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 234 IPR013083 -
Tsu06g00383 240 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 239 - -
Tsu06g00383 240 MobiDBLite consensus disorder prediction 140 177 - -
Tsu06g00383 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Tsu06g00383 240 PANTHER CPG BINDING PROTEIN 3 239 IPR045104 GO:0006355|GO:0042393
Tsu06g00383 240 SMART PHD_3 186 234 IPR001965 -
Tsu06g00383 240 MobiDBLite consensus disorder prediction 148 162 - -
Tsu06g00383 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Tsu06g00383 240 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00383 Tsu-Chr6 3291954 3295686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00383 5 239 Alfin-like Transcription Factor Family AT5G05610 77.966 1.54e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Tsu06g00383 Alfin 5.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00383 - - pvy:116115131 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00383 06 3291954 3295686 Tsu06g00383 06 3291954 3295686 ECH