Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00378 ATGGAGGAGGAGCAGACacaaaccctaacttcagaaGTAGAGCGAGAGCTGGAGAAAGACGAAGCCATGTCTGATTCCGATTCGGACGACGAAGCTCAGCAGAACATCCAAATCGAATCTCTCCGGACCGAGCTTGCCGCTAACCCCTCCAATTACGATGCTCACTTGCAATATATTAATATGTTGAGGAAAACGGGAGATGTTGATAGACTGACAGAAGCACGAGAAGCTATGAGTGAAATATTTCCATTGAGCCCTCCAACGTGGCAACAGTGGATCAAAGATGAGCTTTCTCTCAACCCCGCTTCTCGGTCTAGAGTTCTTAAGCTTTATGAACGCGCCGTGTTTGATTATCTGTCTGTCTCTCTATGGTATGACTACCTTGATTTTGTCCAAGAGTTTGATCCAATGGTACACCAATGTTCATCCACTGGCATTTCCAAGTCAAGGGATATCTTTGAAAGTGCCCTTACTGCTGCTGGTTTGCATGTTGCTCAAGGCAGTAAGATATGGGAAGCATATAGGCAATATGAGCAGGCTGTACTTCTAACTGTTGATGAATCTGATGCACAGgcaaaagaaaaacaagttcaaCGCATTCGAAGTTTATTCCATCGCCAGTTGTCTATCCCCCTTGCTGACATGAATTCAACACTTATTGCCTATAAGACTTGGGAGGTGGAACAAGGAAATTTTCATAATGTTTCCATTGACCTGATTGATACTTATCCTCACGTGGCATCAGCATACCAGAAGGCCTTAGAGATGTATAATGCTCGCATTCATCTTGAAGAACAGATTTATAGCCAACATGTTTCTGATTCAGAAAGACTACAACAGTACATGAACTATTTGAAATTTGAGCAGTCTAATGGAACACCAGCTAGAATTCAAGTTCTATACGAGCGAGCTATTTCCGACTTTCCTTTATCAACTGATCTCTGGCTTGACTATACTCGCTATCTGGACAAAACTTTGAAGGTTGGTAAAATTGTCAGCAATGTATATTCTAGGGCCACTAAGAACTGCCCTTGGGTCGGAGAACTTTGGGTTCGGTATATGCTTTCTTTGGAGCGCGGTCATGCTTCTGAGAAAGACTTGTCTGAAATCTTTGAGAAGTCCCTGCAATGCACCTTCTCTACTTTGGATGAGTATCTTGAATTGTTTCTCACCCGGGTAGATGGCTTAAGGCGAAGAATGGCATTCACCAAAGGAGAGAATCCATTAgaattagaatataaaataataagggaGACCTTCCAGCGTGCATCAGATTACTTGTCACCACACATGAAGAATACAAATGGTTTGTTACATATGCATGCTTATTGGGCCCATTTAGAAACAAAACTCGGAAAAGATATAACTGCAGCCCGTGGAGTTTGGGAGAATTTTCTCAAGACCTGCGGTTCAATGTTGGAGGCGTGGACTGGTTATATAGCCATGGAAGTTGAATTGGGTCACATAAATGAAGCAAGGTCTATATACAAGAGATGCTATAGTAAAAGGTTTTCTGGGACTGGTTCAGAGGACATTTGCAACTCATGGTTACGCTTTGAGAGGGAGTTTGGCAAGTTAGAAGATTTTGATCATGCTTTACAAAAGGTTACCCCACGTCTGGAAGAGCTACATATTTTTAGGTTGCAGCAGGAATCAAAGTCAGTAGaggaaattgaaaataataatccAAGGAGTAATGTACGTGATAAAAGAAAGGTGAGGTCAGATATAGCTGATGAACAGTCTCCAGCAAAGCGAAAGAAAGATGCTAgtggaaaattaaaaaaaccaccCAAGGATAATATATATCAAGTGCAGAACTCTTCTCAGTTAACAAAAGTGGAAGAGACcaatcagaaaaataaaaaatctgacGACAACCACAGTGAGCAGCAGCTTACCCGTGGAAAACACCGGGCATACTCTGACCAGTGCACTGCTTTTATATCAAATCTTCACCCTACGGCAAATGACGAGCATATTCGTGATTTCTTCAGTGATATCGGTGGAATTGTTGCCATCCGCATCCTACATGACAAGTTCACCGGAAAGTCCAGGGGACTAGCTTATGTGGACTTTTTGGATGATGAGCACCTTGTTGCAGCAATAGCTAAGAACAAGAATACCTTACTCGGGAAAAAGCTAAGTATTGCTCGATCTGACCCAAAGCGAGGTGGCAAGGAAACTCTTGATCCAAAAAATGCAGAACATGCACATGCCAATAATCATTCTGATAAAAAAGGTTCAGTATCAAAAGAAACCGATGATACTTTCATGAGAGATGCAAAAGATGGGAAATTCTCTTCTAGAAAACCAGGAAGTGGCAACATGCAATTTAAAGGGAAGAATACTTTTGCCGTGCCTAGAAATGTCAGACCACTTGGTTATACTGCAAATACACCAAAAGCAGAAGAGGGTGGTGAAAAGCCAAAATCTAATGAAGAATTCAGAAAGATGTTCATTGGATAA 2469 0.4002 MEEEQTQTLTSEVERELEKDEAMSDSDSDDEAQQNIQIESLRTELAANPSNYDAHLQYINMLRKTGDVDRLTEAREAMSEIFPLSPPTWQQWIKDELSLNPASRSRVLKLYERAVFDYLSVSLWYDYLDFVQEFDPMVHQCSSTGISKSRDIFESALTAAGLHVAQGSKIWEAYRQYEQAVLLTVDESDAQAKEKQVQRIRSLFHRQLSIPLADMNSTLIAYKTWEVEQGNFHNVSIDLIDTYPHVASAYQKALEMYNARIHLEEQIYSQHVSDSERLQQYMNYLKFEQSNGTPARIQVLYERAISDFPLSTDLWLDYTRYLDKTLKVGKIVSNVYSRATKNCPWVGELWVRYMLSLERGHASEKDLSEIFEKSLQCTFSTLDEYLELFLTRVDGLRRRMAFTKGENPLELEYKIIRETFQRASDYLSPHMKNTNGLLHMHAYWAHLETKLGKDITAARGVWENFLKTCGSMLEAWTGYIAMEVELGHINEARSIYKRCYSKRFSGTGSEDICNSWLRFEREFGKLEDFDHALQKVTPRLEELHIFRLQQESKSVEEIENNNPRSNVRDKRKVRSDIADEQSPAKRKKDASGKLKKPPKDNIYQVQNSSQLTKVEETNQKNKKSDDNHSEQQLTRGKHRAYSDQCTAFISNLHPTANDEHIRDFFSDIGGIVAIRILHDKFTGKSRGLAYVDFLDDEHLVAAIAKNKNTLLGKKLSIARSDPKRGGKETLDPKNAEHAHANNHSDKKGSVSKETDDTFMRDAKDGKFSSRKPGSGNMQFKGKNTFAVPRNVRPLGYTANTPKAEEGGEKPKSNEEFRKMFIG 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00378 822 SUPERFAMILY RNA-binding domain, RBD 641 727 IPR035979 GO:0003676
Tsu06g00378 822 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 648 715 IPR000504 GO:0003723
Tsu06g00378 822 CDD RRM_SF 648 717 - -
Tsu06g00378 822 Gene3D Tetratricopeptide repeat domain 272 566 IPR011990 GO:0005515
Tsu06g00378 822 MobiDBLite consensus disorder prediction 616 637 - -
Tsu06g00378 822 Gene3D Tetratricopeptide repeat domain 42 237 IPR011990 GO:0005515
Tsu06g00378 822 PANTHER EMBRYO DEFECTIVE 140 4 818 - -
Tsu06g00378 822 MobiDBLite consensus disorder prediction 8 22 - -
Tsu06g00378 822 MobiDBLite consensus disorder prediction 555 639 - -
Tsu06g00378 822 MobiDBLite consensus disorder prediction 601 615 - -
Tsu06g00378 822 MobiDBLite consensus disorder prediction 719 768 - -
Tsu06g00378 822 Gene3D - 609 771 IPR012677 -
Tsu06g00378 822 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 4 818 - -
Tsu06g00378 822 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 645 722 IPR000504 GO:0003723
Tsu06g00378 822 SUPERFAMILY TPR-like 44 537 IPR011990 GO:0005515
Tsu06g00378 822 SMART hat_new_1 327 359 IPR003107 GO:0006396
Tsu06g00378 822 SMART hat_new_1 487 522 IPR003107 GO:0006396
Tsu06g00378 822 SMART hat_new_1 292 324 IPR003107 GO:0006396
Tsu06g00378 822 SMART hat_new_1 66 98 IPR003107 GO:0006396
Tsu06g00378 822 SMART hat_new_1 102 133 IPR003107 GO:0006396
Tsu06g00378 822 SMART hat_new_1 144 180 IPR003107 GO:0006396
Tsu06g00378 822 SMART hat_new_1 453 485 IPR003107 GO:0006396
Tsu06g00378 822 MobiDBLite consensus disorder prediction 1 32 - -
Tsu06g00378 822 MobiDBLite consensus disorder prediction 804 822 - -
Tsu06g00378 822 Pfam Lsm interaction motif 808 820 IPR008669 -
Tsu06g00378 822 MobiDBLite consensus disorder prediction 555 596 - -
Tsu06g00378 822 SMART rrm1_1 646 718 IPR000504 GO:0003723
Tsu06g00378 822 MobiDBLite consensus disorder prediction 719 822 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00378 648 741 Eukaryotic Initiation Factors Gene Family AT2G36660 26.263 7.61e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00378 K22611 - gmx:100794881 1278.08