Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00377 ATGGATCGCACACAACTTCTTCTTGTTGGTTTACCAATCTTCCTTTTCTGCACAGACATTATCAATCTTTTCTCTACATCACCACCTCCCAAATCAActcatcataatcataatcacaaTCACCCAATTCCTCaacctcaacaacaacaaccacatcTTCAACAACCACTTGATTTTCCAACACAGAAACAAAATGGAATTGGCCCAATTGGTGTTGGTCCAATTGGTGTTGGCAATACTGTTAGCATTGATTTCTGCACTTCATGTTCTTACAAGGGAACTGCGGTAACGGTGAAAAACATGCTGGAATCTTTATTTCCTGGCATTAATGTTGTTTTGGGTAACTATCCTCCTGCACTTCCGAAGCGTGTTCTCAGCAAAATAATTCCAGTGGTGCAAACTGGAGTTGTTATAGCTATAACCGCAGGTGACCAGATATTCCCGAGATTGGGAGTGACACCACCACAATTGTACTATTCCTTGCGTGCCAATAAGTTTAGAAGTATTGCTAGCATATGGCTTCTTTCAAATTTCGTTCAATCCTTCTTACAGAGTTCCGGTGCTTTCGAAGTATATTTCAATGGCGAATTGGTTTTCTCCAAGCTGAAGGAGAACAGATTCCCCGGCGAATTTGAGTTGAAGGAACTTATTGGCAGAAGAATAGGCTTCTTTTGTGAAACTGTTATCATGAAGTTTATGCTTATTGAAAATTTGAGTGCATATGTTATGTCTGTGAAATTCTGTGCTTCGGATTATCCAAGAGACAGTGATGGAGCCTGCTTTAAGATGAGATTGTCTTATAGCCCAGCTGCTCAATTTCTCCTTTTTCTGGTTAAGTGGACTGATTGCCATCTTGCCGGAGCATTAGGATTGCTTAATGTTCTCGTATACAAGGTATTTGATGATGGGAAGACAACTATGTCTGTTTACGAAAGAAAAGCCACTCTAAAGGAGTTCTACGGTGTGATCTTGCCCTCTTTATCACAACTCCAGAGAGGAATCACCGATGTAGAAGAGAGAAAACAAGAAGAATTATGTGCTACAAAGTACAAGCCTAAAGATGTGATTAGAAAAGGAAAGATATCTCAAATTGAtatagagagagaagaagaatgtCCTATTTGTATGGAAATGACCAACAAGGTTGTGTTACCTAAATGCAACCATTCTCTGTGTATGAAATGCTATCATGACTGGCATAAAATATCTCTATCTTGCCCTTTCTGTCGCGACAGTCTTAGAAGAGTAAAGTCAGGTGACCTTTGGATCTATATGAGTAGCTGTGAGATAACTGATTTGGAATCAATCAACAAGGAGAATTTAAAAAGGCTATTTATGTACATTGAAAAGTTGCCTCTGGTTTCACCGGAACAAGTATTCATCGCTTATCCTCAAAacttttga 1404 0.3732 MDRTQLLLVGLPIFLFCTDIINLFSTSPPPKSTHHNHNHNHPIPQPQQQQPHLQQPLDFPTQKQNGIGPIGVGPIGVGNTVSIDFCTSCSYKGTAVTVKNMLESLFPGINVVLGNYPPALPKRVLSKIIPVVQTGVVIAITAGDQIFPRLGVTPPQLYYSLRANKFRSIASIWLLSNFVQSFLQSSGAFEVYFNGELVFSKLKENRFPGEFELKELIGRRIGFFCETVIMKFMLIENLSAYVMSVKFCASDYPRDSDGACFKMRLSYSPAAQFLLFLVKWTDCHLAGALGLLNVLVYKVFDDGKTTMSVYERKATLKEFYGVILPSLSQLQRGITDVEERKQEELCATKYKPKDVIRKGKISQIDIEREEECPICMEMTNKVVLPKCNHSLCMKCYHDWHKISLSCPFCRDSLRRVKSGDLWIYMSSCEITDLESINKENLKRLFMYIEKLPLVSPEQVFIAYPQNF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00377 467 ProSitePatterns Zinc finger RING-type signature. 387 396 IPR017907 -
Tsu06g00377 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 419 IPR013083 -
Tsu06g00377 467 Gene3D Glutaredoxin 164 220 - -
Tsu06g00377 467 SUPERFAMILY Thioredoxin-like 79 221 IPR036249 -
Tsu06g00377 467 TIGRFAM CXXU_selWTH: selT/selW/selH selenoprotein domain 81 218 IPR011893 -
Tsu06g00377 467 SMART ring_2 372 409 IPR001841 -
Tsu06g00377 467 ProSiteProfiles Zinc finger RING-type profile. 372 410 IPR001841 -
Tsu06g00377 467 PANTHER RING FINGER PROTEIN 41, 151 238 466 - -
Tsu06g00377 467 PANTHER E3 UBIQUITIN-PROTEIN LIGASE AIRP2 238 466 - -
Tsu06g00377 467 SUPERFAMILY RING/U-box 360 415 - -
Tsu06g00377 467 MobiDBLite consensus disorder prediction 28 60 - -
Tsu06g00377 467 Pfam Zinc finger, C3HC4 type (RING finger) 369 415 - -
Tsu06g00377 467 Pfam Rdx family 80 217 IPR011893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00377 Tsu-Chr6 3202069 3211290 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00377 K25840 - gmx:100819267 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00377 06 3202069 3211290 Tsu06g00377 06 3202069 3211290 ECH
Tsu04g01360 04 13829596 13833252 Tsu06g00377 06 3202069 3211290 PCT