Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00376 ATGGCCGTTGTTGGTGTTCTCGCTTTACAGGGTTCTTTCAACGAACACATAGCAGCTCTAAGAAGATTAGGTGTCAAAGGTGTTGAAATTCGTAAACCTGAACAACTTCTCACCATTAATTCTCTCATCATCCCTGGTGGTGAAAGTACTACTATGGCTAAACTCGCTGAGTATTTCAACCTCTTTCCGGCTTTGCGTGAGTTTGTGCAAATGGGAAAGCCAGTTTGGGGAACCTGTGCAGGACTAATTTTCTTGGCTAATAAAGCTACAGGACAGAAGACCGGTGGACAAGAACTGGTTGGTGGACTTGATTGTACTGTGCACAGAAATTTCTTTGGCAGCCAGATTCAAAGCTTTGAGACTGAGCTTGCAGTACCTGACCTTGCATCCAAGGAAGGTGGTCCTGAAACATTCCGTGGAGTTTTTATTCGTGCCCCAGCAATTCTTGATGTAGGGCCAGAAGTTCAAGTCCTAGCTGATTATCCTGTACCTTCTGATAAAGTGCTGAGTTCTGATTCCTCTGTTGAAGGAAACAAGGAGAATGCTGAAGAACAAAGCAAAGTCATAGTTGCTGTGAGACAAGGGAACATACTAGCAACTGCTTTTCATCCTGAATTGACGGCTGATACTCGATgGCATAGTTATTTCTTAAAGATGGGAAATGTGATCGGAGAAGAGGCCTCAAGTAGCATTGTTCCAGCAGAAGTTGGATCATCTCATTTCACCATTCTCCCTCCTTCAAAAAACAAGTATAAATTCGGGTTCGGAAAAAAGAAAGCAGCACCAAAGAAACCATCACGATCAAGTCCAACCACCGATCGTCCGTTATGGTATCCAGGTGCAAAGTCACCGGAATGGCTTGACGGAAGTTTGATCGGAGATTACGGATTCGATCCATTCGGTTTGGGGAAACCAGCTGAGTATTTGCAATTTGATCTTGATTCACTTGATCAGAATTTAGCTAAGAATCTTGCCGGAGATGTTATCGGAACTAGGACGGAATTTTCCGACGTGAAATCGACGCCGTTTCAGCCTTATACCGAGGTATTTGGACTTCAGAGGTTTAGAGAATGTGAATTGATTCATGGAAGATGGGCTATGCTTGCTACTCTTGGTGCTCTTACTGTTGAATGGCTTACTGGTGTTACTTGGCAAGATGCTGGAAAGGTGGAGCTAGTAGAAGGGTCAACATATCTTGGACAACCACTTCCATTCTCCATCACAACACTAATCTGGATTGAAGTACTAGTAATTGGATACATTGAATTCCAGAGGAATGCAGAGCTTGATTCAGAAAAGAGATTATACCCAGGTGGTAAATTCTTTGACCCACTTGGTTTAGCAGCTGATCCAGAGAAGAAAGCAACACTTCAATTGGCAGAAATTAAACATGCTCGTCTTGCTATGGTTGCATTCCTTGGTTTTGCTGTTCAAGCTGCTGCTACTGGTAAAGGTCCTCTTAACAATTGGGCTACACATTTGAGTGATCCTCTTCACACTACCATCATTGATACCTTTTCTTCCTCTTAG 1530 0.4314 MAVVGVLALQGSFNEHIAALRRLGVKGVEIRKPEQLLTINSLIIPGGESTTMAKLAEYFNLFPALREFVQMGKPVWGTCAGLIFLANKATGQKTGGQELVGGLDCTVHRNFFGSQIQSFETELAVPDLASKEGGPETFRGVFIRAPAILDVGPEVQVLADYPVPSDKVLSSDSSVEGNKENAEEQSKVIVAVRQGNILATAFHPELTADTRWHSYFLKMGNVIGEEASSSIVPAEVGSSHFTILPPSKNKYKFGFGKKKAAPKKPSRSSPTTDRPLWYPGAKSPEWLDGSLIGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00376 509 Gene3D Chlorophyll a/b binding protein domain 277 509 - -
Tsu06g00376 509 MobiDBLite consensus disorder prediction 255 277 - -
Tsu06g00376 509 Gene3D - 1 227 IPR029062 -
Tsu06g00376 509 CDD GATase1_PB 4 217 IPR002161 GO:0004359|GO:0042819|GO:0042823
Tsu06g00376 509 SUPERFAMILY Chlorophyll a-b binding protein 268 507 - -
Tsu06g00376 509 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 255 509 - -
Tsu06g00376 509 Pfam Chlorophyll A-B binding protein 284 479 IPR022796 -
Tsu06g00376 509 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 255 509 IPR001344 GO:0009765|GO:0016020
Tsu06g00376 509 Pfam SNO glutamine amidotransferase family 6 219 IPR002161 GO:0004359|GO:0042819|GO:0042823
Tsu06g00376 509 ProSiteProfiles PdxT/SNO family profile. 3 221 IPR002161 GO:0004359|GO:0042819|GO:0042823
Tsu06g00376 509 SUPERFAMILY Class I glutamine amidotransferase-like 3 219 IPR029062 -
Tsu06g00376 509 TIGRFAM PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 4 161 IPR002161 GO:0004359|GO:0042819|GO:0042823
Tsu06g00376 509 ProSitePatterns PdxT/SNO family family signature. 41 51 IPR021196 -
Tsu06g00376 509 Hamap Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 4 219 IPR002161 GO:0004359|GO:0042819|GO:0042823
Tsu06g00376 509 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 3 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00376 Tsu-Chr6 3191078 3200600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00376 247 509 Chloroplast and Mitochondria Gene Families AT3G08940 87.833 1.38e-169 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00376 K08915 - ath:AT5G01530 478.018