Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00358 ATGTCTTCCCCAACAACTGATGCAATAGATTGGGACAATTTATCATTGACTGATCATCAGGATTTGATGTCTTCCCCAACAAGTGATGCAATAGATTGGGAGAAATTATTCTTGGCTAATCATGATTcggatgataataatgatgatgcTGAAAGGAATCCTGAAATGAACATGTTACCACACTGGAAAGAGCAGGATACTCCAGACAGTATTAGAAGAAAGTACGACGTGTTCTTGAGTTTCAGAGGTGAAGACACTCGCACATCCTTCATTTCACATCTCTATTCCTCTCTTCAAAACGCCGGAATTATCATTTTCAAAGATGATCATTCACTTCAAAGAGGAGATCGCATCTCTCAATCGCTACTGGAAGCAATCGAAGAGTCTCAAATTTCTGTTGTTGTCTTCTCCAAAAACTACGCTGATTCGCAGTGGTGTCTTCGAGAATTGATGCAAATTATGGAGTGTAACAGAACTATAGGTCAAGTGGTTCTACCAGTGTTCTACGATGTTGATCCCTCCCAAGTACGTCATCAAACAGGTGAGTTTGGTAAAGCTTTTCAAAATGCATTGAACACTTTCAAATTGACGGCATTATTGGTGCCAAAGTGGAGAAATTCGCTTCGTGATGCTGCTGGTCTTGCAGGATTTCTGGTCCTAAATTCCAGgaatGAAAGTGAGGTTATCAAGGATATTGTTCAAAAAGTTACACATTTGCTTGACAAGACAGATCTGTTCATTGCTAATCATCCCGTGGGAGTCGAATCTCGAGTACTAGATATGATTCAGCTACTAGACACCCCCCTTTCAAATGATGTTCTAATACTGGGGATGTGGGGTATGGGAGGCATTGGTAAAACAACTATTGCAAAATCCATTTACAATAAAGTTGGCCGCAATTTTGAAGGTAGGTGCTTCCTAGCAAATATTAGGGAAGTTTGGGAGCAAGATGTTGGTCCAATGAATTTACAAGAATGTATTTTGTATGATATCTGCAAAGAAACCACAACCAAGATACAAAACATTGAATTAGGAAAATATGTATTAATGGAAAGACTATGCCATAAAAAAGTACTTCTTGTACTTGACGACGTCAATAAATTGGACCAACTCAAAGCTTTGTGTGGAAGCCGTAAATGGTTTGGTTCGGGGAGTAGGATAATCATCACAACCAGAGATAAGCAAATAATTAGAGGGAATAGAGTTAACCGAGACTGCACAATGAAAGAAATGGATGACAGTGAGTCTGTTGAGCTTTTTAGTTGGCATGCATTTAAGCAAGCATGTCCTAGAGAAGATTTTGCTGAAATTTCCAAAAATGTTGTCGAGTATTGTGGGGGATTGCCGCTGGCTCTTGAAGTCCTCGGGTCATATTTGTTTGACAGGCCGGTAACAGAGTGGGAATGTGTATTAGAGAAACTCAAGAGAATTCCCAATGAtcaagtacaaaggaaattgaaaataagctatGATGGTTTAAATGATGATACGGAGAGAGATATTTTCCTTGACATAGCTATTTTCTTTATTGGGATGGATAGAAATGATGTTGTGCATATATTAAATGGTTGTGGACTTTTTGCAAAAATTGGAATAAGTGTCCTTGTTGAGCGTAGCCTTGTAACTGTTGATAATAAAAACAAGCTTGGAATGCATGATTTGCTACGTGATATGGGAAGAGAAATTGTTCGTGAGAAATCACCAAAGAAACTTGAGAAGCGTAGCAGATTATGGTTTAATGAGGATGTCCTGGATGTATTGTCAGATGAAACTGGAACAAAAGCTGTTGAGGGACTGACTTTGAAGCTGCCAGATCGTAGTGCACAACATTTTCGTACCAAAGCATTTAAGAACATGAAGAAACTCAGATTGCTTCAACTTTCTGGTGTAAAACTTGATggagattttaaatatctttcaAGAAATTTGAGTTGGCTGTGTTGGAATGGATTTCCTCTAACATGCATACCTTCAAACTTTTATCAAAGAAAGTTAGTGTCCATTGAGTTGGAAAACAGCAATGTCAAGCTTTTGTGGAAAGAGATGCAGAGGATGGAGAATCTGAAAATTCTTAATCTTAGTCATTCTCATTATCTAACACAGACCCCAGACTTTTCAAACATGCCTAATCTTGAAAAGCTAATACTCAAAGATTGTCCAAGGCTGTCTGAGGTTTCCCATACCATTGGATATCTTCATAAAGTTCTTCTGATAAATTTGAAAGACTGTATTAACCTTTCTAACCTTCCAAGGACCATCTATACATTGAAATCTCTGAAAAATCTTATTCTATCTGGATGTTTAAAGATTGACAAGTTGGAAGAGGACATAGAACAAATGGGATCTTTAACCACTCTGATTGCAGATAACACTGCTATAACAGAAGTTCCCTTTTCACTAGCAAGGTCAAAAAGAATTGGATATATTTCTCTGTGTGGCTATAAAGGATTCGCACATGATGTATTTCCTTCTATCATTCAGTCTTGGATGTCACCGATAAATAAGTTGTCATCCTTAGTTCAAACACCTGCTGGCATGTCTTCTCTTGTTTCTTTAGATGCATCAAAAAGTAGTTCCCACAGTCTATCATCTATTTCCGAGGTCCTTACAAAGGTTCTAAGTCTTTTGGTAGAGTGTGGCTCAAAACTTCAACTTTCACGATATGCAATTTTAGATGCTTTAAGTGCAGCTAATTCTAAAGAATTGGAATCAACTGCAATTACATCACAAGTATCAATTGCAAAGAATTCTACATTAGTTGAATGTTGTGGTCAAGTGCACATTTCAGCAACAAAAAAATCCCTGAAGTCTCTTCTGTTTAGAATGGGAATGAATTGCCAAGCCGCCGATGTTCTGGAAGAAAGCATCTTAAAGaacaTGACTGTCAATGCATTGGATGGTTGCTTGATCCCTGGTGATAATTATCCAAATTGGTTAACCTTCAATTCCGAAGGTTCTTCAGTTATTTTTACAGTCCCTCAAGTGAAAGGGCGTAACTTGAAGACAATGATGTGCTTTGTCTATTCCTCAAGCCCGGATAACATAACTTCAGATGGCCTTACCAATGTGTTGGTCATTAATCACACAAAGACCACCATTCAGCTCTATAAGAAAGAGGCGTTCTCCTCCTTTAAAAACGAGGACTGGCAGAGAGTGTTATCAAATATGGAACCTGGTGACAAAGTGgagattgttgttgtttttggaAACGATTTCATTGTGTTGAAGACAGCAGTTTATCTCCTATATGATGAACCAATCGATGAAACATTGGAGCAATGTCATTCACCagataaattttttgttgttgatagtgGTGATGAAAATGAATCCGCTGCCAAGAGGATCTCTCTTCAAGTAGTGCCCGCATTTCATTTTAAACAGAAACGAAGAAAACTTGACTGA 3405 0.3695 MSSPTTDAIDWDNLSLTDHQDLMSSPTSDAIDWEKLFLANHDSDDNNDDAERNPEMNMLPHWKEQDTPDSIRRKYDVFLSFRGEDTRTSFISHLYSSLQNAGIIIFKDDHSLQRGDRISQSLLEAIEESQISVVVFSKNYADSQWCLRELMQIMECNRTIGQVVLPVFYDVDPSQVRHQTGEFGKAFQNALNTFKLTALLVPKWRNSLRDAAGLAGFLVLNSRNESEVIKDIVQKVTHLLDKTDLFIANHPVGVESRVLDMIQLLDTPLSNDVLILGMWGMGGIGKTTIAKSIYNKVGRNFEGRCFLANIREVWEQDVGPMNLQECILYDICKETTTKIQNIELGKYVLMERLCHKKVLLVLDDVNKLDQLKALCGSRKWFGSGSRIIITTRDKQIIRGNRVNRDCTMKEMDDSESVELFSWHAFKQACPREDFAEISKNVVEYCGGLPLALEVLGSYLFDRPVTEWECVLEKLKRIPNDQVQRKLKISYDGLNDDTERDIFLDIAIFFIGMDRNDVVHILNGCGLFAKIGISVLVERSLVTVDNKNKLGMHDLLRDMGREIVREKSPKKLEKRSRLWFNEDVLDVLSDETGTKAVEGLTLKLPDRSAQHFRTKAFKNMKKLRLLQLSGVKLDGDFKYLSRNLSWLCWNGFPLTCIPSNFYQRKLVSIELENSNVKLLWKEMQRMENLKILNLSHSHYLTQTPDFSNMPNLEKLILKDCPRLSEVSHTIGYLHKVLLINLKDCINLSNLPRTIYTLKSLKNLILSGCLKIDKLEEDIEQMGSLTTLIADNTAITEVPFSLARSKRIGYISLCGYKGFAHDVFPSIIQSWMSPINKLSSLVQTPAGMSSLVSLDASKSSSHSLSSISEVLTKVLSLLVECGSKLQLSRYAILDALSAANSKELESTAITSQVSIAKNSTLVECCGQVHISATKKSLKSLLFRMGMNCQAADVLEESILKNMTVNALDGCLIPGDNYPNWLTFNSEGSSVIFTVPQVKGRNLKTMMCFVYSSSPDNITSDGLTNVLVINHTKTTIQLYKKEAFSSFKNEDWQRVLSNMEPGDKVEIVVVFGNDFIVLKTAVYLLYDEPIDETLEQCHSPDKFFVVDSGDENESAAKRISLQVVPAFHFKQKRRKLD 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00358 1134 SUPERFAMILY L domain-like 600 876 - -
Tsu06g00358 1134 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 81 1083 - -
Tsu06g00358 1134 Gene3D - 410 494 IPR042197 -
Tsu06g00358 1134 SUPERFAMILY "Winged helix" DNA-binding domain 481 587 IPR036390 -
Tsu06g00358 1134 Pfam TIR domain 74 238 IPR000157 GO:0007165
Tsu06g00358 1134 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 81 1083 IPR044974 GO:0006952
Tsu06g00358 1134 Gene3D - 248 403 IPR027417 -
Tsu06g00358 1134 PRINTS Disease resistance protein signature 352 366 - -
Tsu06g00358 1134 PRINTS Disease resistance protein signature 683 699 - -
Tsu06g00358 1134 PRINTS Disease resistance protein signature 275 290 - -
Tsu06g00358 1134 PRINTS Disease resistance protein signature 445 459 - -
Tsu06g00358 1134 SMART till_3 74 214 IPR000157 GO:0007165
Tsu06g00358 1134 Pfam NB-ARC domain 261 484 IPR002182 GO:0043531
Tsu06g00358 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 505 IPR027417 -
Tsu06g00358 1134 SUPERFAMILY Toll/Interleukin receptor TIR domain 68 217 IPR035897 -
Tsu06g00358 1134 ProSiteProfiles TIR domain profile. 73 240 IPR000157 GO:0007165
Tsu06g00358 1134 Gene3D - 69 247 IPR035897 -
Tsu06g00358 1134 Gene3D Ribonuclease Inhibitor 584 966 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00358 Tsu-Chr6 3004782 3009315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00358 663 801 WRKY Transcription Factor Family AT4G12020 30.935 2.93e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00358 - - lja:Lj0g3v0331109.1 1416.36