Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00352 ATGGATGCTGTCAATACAGGTAAATGGCGTGGCATTAAGGCTGGAAGAGCAGGGCCCATGGTCTCTCACTTGATGTTTGCAGACGATTTATTGTTGTTTGGAGAGGCTAGCGAAAAGCAGGTTCAGTGTGTGCTAGATATTCTAAATGTTTTCTGCAGTTTGTCGGGGCAAGAGGTGAGCCAAGAAAAAACTAGCATTTTATTTTCCAAGAATGTTAGACGCCGAGTGAGAGATAAATTGCTGAGTATGTCGGGTTTTAGAGAAACAAATGATCTCGGAAAGTATCTTGGGGTACCGCTGAATGGGAGAGCTCCTAAAAATGCCGAATACCATTACCTTATTGATCAAGTAAAAAATAAGCTCTCGGCATGGAAGGCAAAACAACTATCTTTTGCGGGAAGATTAACGTTGGCTAAAAGTGTGTTGGAGGCAGTCCCGATTTACCCTAGGATGACTGAAAAAATTCCAAAAGCTTGTTTAGACGACATTCAAAGAATTCAACGGAATTTTATTTGGGGTGATTACGACAATGTGCGAAAATTTCATGCCGTCAATTGGAATATGGTAACTCGGCCTAAGTGGATGGGTGGTCTGGGTCTTCGGAAGCTTGAGGTGATGAACCAAGcttgtcttttaaaattaggATGGAAGCTTAATTGTGGAGCTACTGATTTTTGGTGTCAGGTAGTGAAAGGAAAGTATGGAGTTCACAATTTTAATAATGATATTGCCATTAGATCTTCAAACTCTAGCATGTGGAAGGCTTTACTAAGGTTGAAAGACCAGCTAACAAACAACATGTGCTGGTGTATCAGGAATGAAAGTAGTGTAGATGCATGGAATCAAATTTGGATCGAGCCGGGCTGCCGTGTGAGCCAGTTATGCATCGTGCCGTATCAGCTGCAAGGAGCGCGCGTTTGTGATCTGGTAGATGAAAATGGGAGCTGGAACTGGCAGTTATTAGAAACATGGATACCTGaaaatattatgaataaaatagCAGCAATCCCGCCTCCTTGTGAAGAGAACGGAAGCGATGAACCAGTCGGAATATGCAGTAACAGTAATGGTTTTTCTGTAACAATTATGTATGAGCAGCTATGTGGAATTGTGAGAGATAATGTTGAATCCAATAATTGGATTAAAGTGTGGAAATTAAATGTCCCGGAGCGCGTTCGTTGCTTTGTTTGGTTGTTATTACATGACAGACTGCTTACTAATTACCGTAAAAGTCGAATGGGGCTTGGTCATGCAATGTGTAATTACTGTGGAGATTTAGAGGAAACTACACTACATGCCATTAGAGATTGCGCGTTAATTATTCCGTTTTGGCTTCAAGTTGTGCCGATGGAAGATAGGAGTAGTTTCTTTATGGAAGATACTCAAGATTGGATTTCTAGGAATTTAATGAAAGGAAGAACGCGGCGAAGGGGTAGTGATTGGTGTGATTTTTGGGCGACGACTTGTCATAGTTTATGGATGTGGAGAAACAAAGAAGCTCATGATGAGGAGTTTGTTAGACCCATGCAGCCAGTGAATTATGTGCAAAAACGTGTAGAAGAATATCAGCATGCAAAACAAGCAAGTGACTTGCTTGATGGAAGAGAGTACACGCTAGTAGATATTGGATGGAAGCCTCCAAGTGGTAGTTTTGTCAAATTGAATACAGATGGAGCtagaaaagataataacaaaGCTGGTTGCGGTGGAATTATTCGGGGCAATCACGGTGAATGGCTTGGTGGATTTGCTAAAGGTGTTGGTGAATGTAGCGCGTTTATAGCGGAACTATGGGGGGTCTTTGAAGGCTTATCACTAGCGAAACGGATGTGTTTCAGGAAGGTTGAGCTTCATATCGACTCGGTTGCGGTGGTTCAGGTGATATCAACTGGAAAATTGAAAAGCAAGTTAGGCTGGTCTTTGGTTTTAAATATTCGGAAATTATTAGATTTGGATTGGGAAGTTACCATTACACATGCCTATCGTGAAACAAATAAGTGTGCTGATGCGTTGGCAAATATAGGATGTCAATTAGGTAGAGAGATAATCTTTTTTGAGGATTGTCCTCCGCATATGAAAGATCTTGTTCTAGCTGATATTCTCGATTCTCCTCATTTCATCCTCGATTCCGTCTCATTTACAGCTCGAGGAAAAAGGATTGTTGTTGTAATCATTGCTATGGACTTGAATGCGTCTCCTGTaccagaggatgatgaagatgTTTTTGAGGAGAGGGTACATGTTCAAGAGTATATTGCACCTGAAGAACGCATAGAAAGTGGAGCTGAGATAGCACGCCGGGAGCGTGAGGAAAGAAAGAGACGCTTGAAAAGAGAACGTCCAGATGATAATAGATCTGTGCACCAATCACAGTCACCTCGACATGATCAACAATTTCATacaaaaaaccctaaatcatATGATACAAGTAGGCTTCCTCCGGGGTGGTTAGATTGTCCTGCATCTGGCCAGGAGATTTGCTGCATGATACCTTCTAAGGTTCCTCTTGGTGAATCATTCAACGACTGCATTTTTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTGATTGATTTGACAAATACCTCTCGATACTATCCAGTAACAGATTTAAAAAAAGAGGGTATCAAGCATGTTAAGATTCAATGCAGGGGGCGTGATTCTGTACCCGAAAATTCATCTGTGAATCAGTTTGTCTACGAGGTTATACAATTTTTGTCACGCCAAAAGCAGTCAAAGAAGTATATACTTGTTCATTGTACACATGGGCATAATCGTACAGGATACATGATTATCCATTATCTAATGCGTGCTATGTCAATGTCTGTTACTCAGGCAATTAAAATTTTTTCTGAAGCACGCCCTCCAGGAATCTATAAACCCGATTATATTGATGCATTGTACGCATTTTATCATGAGAAAAAGCCTGAGATGGTAGTTTGTCCTCCTACTCCGGAGTGGAAAAGATCTTCTGAATTTGATCTCAATGGTGAAGCAGTTCcagacgatgatgatgatggattacCGGGTCCTGATTTGCAGGAGAACCACGAGACTGCTCAGATGACAAATGATGATGTTTTAGGAGATGAAATACCTGCTGATCAGCAAGATGCATTTCGACAGTTCTGTTATCAAACACTTAGATTGGGTGTTGGGGCCAGAGGACATGCACAATTTCCAGGATCGCACCCAGTTTCTCTCAACAGGGATAATTTGCAGTTATTACGACAACGTTATTATTATGCAACATGGAAGGCTGATGGTACACGGTATATGATGCTAATTACAATGGATGGGTGTTACTTGATTGATAGAAGTTTTAATTGTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGAGTACAAATGAGGGTTTGGGCGAGAAGACCCACCATTTCACATTACTTGATGGCGAGATGGTTATTGATACCCTGCCAGATTCACATAAGCAGGAGAGAAGATACCTTATATATGATCTTATGGCAATCAACCACGTTTCAGTAATAGAGCGACCCTTCTGTGAAAGATGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATAATGAACGTCAACATATTTATCAGAGCAGAAATCCTTACTACAGATATGATCTGGAACCGTTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTTTCTACTGTCCAAAAGCTTTTAAAGGAATTCATTAAAAGACTCTCACATGAGGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCTTATGTACCACGTACTCACGAAGGACTCTTAAAGTGGAAATACGCCAATTTAAACTCAGTTGACTTTCTGTTTGAGGTTGAAGGTGACAGGGAACTACTTTTTGTGAATGAGCGGGGAAAGAAGAAACTCATGGATGGGAATAAGGTTGCTTTCAAAGATGGTTCAGATCCGTCACTTTATTCCGGAAAGATCATCGAGTGTACTTGGGATTTTGATAACCTGGAATGGATATTCTTGCGAATTAGGACAGATAAATCAACTCCAAATGAGTTTAATACTTACAGAAAGGTGATGCGTAGCATAAAAGACAACATCACAGAGGAAGACTTGTTGAATGAAATAAATGAGATTATTCGCCTTCCCATGTACGCGGACAGGATAAAAACTGATAGTAAAGCAACTCAGCATGCCAATGCTGCAAAGCGAAGGTGA 4218 0.4007 MDAVNTGKWRGIKAGRAGPMVSHLMFADDLLLFGEASEKQVQCVLDILNVFCSLSGQEVSQEKTSILFSKNVRRRVRDKLLSMSGFRETNDLGKYLGVPLNGRAPKNAEYHYLIDQVKNKLSAWKAKQLSFAGRLTLAKSVLEAVPIYPRMTEKIPKACLDDIQRIQRNFIWGDYDNVRKFHAVNWNMVTRPKWMGGLGLRKLEVMNQACLLKLGWKLNCGATDFWCQVVKGKYGVHNFNNDIAIRSSNSSMWKALLRLKDQLTNNMCWCIRNESSVDAWNQIWIEPGCRVSQLCIVPYQLQGARVCDLVDENGSWNWQLLETWIPENIMNKIAAIPPPCEENGSDEPVGICSNSNGFSVTIMYEQLCGIVRDNVESNNWIKVWKLNVPERVRCFVWLLLHDRLLTNYRKSRMGLGHAMCNYCGDLEETTLHAIRDCALIIPFWLQVVPMEDRSSFFMEDTQDWISRNLMKGRTRRRGSDWCDFWATTCHSLWMWRNKEAHDEEFVRPMQPVNYVQKRVEEYQHAKQASDLLDGREYTLVDIGWKPPSGSFVKLNTDGARKDNNKAGCGGIIRGNHGEWLGGFAKGVGECSAFIAELWGVFEGLSLAKRMCFRKVELHIDSVAVVQVISTGKLKSKLGWSLVLNIRKLLDLDWEVTITHAYRETNKCADALANIGCQLGREIIFFEDCPPHMKDLVLADILDSPHFILDSVSFTARGKRIVVVIIAMDLNASPVPEDDEDVFEERVHVQEYIAPEERIESGAEIARREREERKRRLKRERPDDNRSVHQSQSPRHDQQFHTKNPKSYDTSRLPPGWLDCPASGQEICCMIPSKVPLGESFNDCIFPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVTDLKKEGIKHVKIQCRGRDSVPENSSVNQFVYEVIQFLSRQKQSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYAFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDGLPGPDLQENHETAQMTNDDVLGDEIPADQQDAFRQFCYQTLRLGVGARGHAQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNCRRVQMRFPCRSTNEGLGEKTHHFTLLDGEMVIDTLPDSHKQERRYLIYDLMAINHVSVIERPFCERWKMLEKEVIEPRNNERQHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVQKLLKEFIKRLSHEADGLIFQGWDDPYVPRTHEGLLKWKYANLNSVDFLFEVEGDRELLFVNERGKKKLMDGNKVAFKDGSDPSLYSGKIIECTWDFDNLEWIFLRIRTDKSTPNEFNTYRKVMRSIKDNITEEDLLNEINEIIRLPMYADRIKTDSKATQHANAAKRR 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00352 1405 SUPERFAMILY Ribonuclease H-like 551 678 IPR012337 -
Tsu06g00352 1405 ProSitePatterns Tyrosine specific protein phosphatases active site. 931 941 IPR016130 GO:0016311|GO:0016791
Tsu06g00352 1405 Gene3D - 1303 1382 IPR012340 -
Tsu06g00352 1405 CDD RNase_H_like 554 673 IPR044730 -
Tsu06g00352 1405 Gene3D - 550 677 IPR036397 GO:0003676
Tsu06g00352 1405 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 812 1001 IPR029021 -
Tsu06g00352 1405 ProSiteProfiles Dual specificity protein phosphatase domain profile. 834 990 IPR020422 GO:0006470|GO:0008138
Tsu06g00352 1405 Pfam Reverse transcriptase-like 555 673 IPR002156 GO:0003676|GO:0004523
Tsu06g00352 1405 MobiDBLite consensus disorder prediction 791 808 - -
Tsu06g00352 1405 MobiDBLite consensus disorder prediction 1008 1029 - -
Tsu06g00352 1405 Gene3D DNA ligase/mRNA capping enzyme 1036 1275 - -
Tsu06g00352 1405 Gene3D Protein tyrosine phosphatase superfamily 785 1007 IPR029021 -
Tsu06g00352 1405 MobiDBLite consensus disorder prediction 763 811 - -
Tsu06g00352 1405 PANTHER MRNA-CAPPING ENZYME 725 1405 - -
Tsu06g00352 1405 CDD Adenylation_mRNA_capping 1065 1276 IPR001339 GO:0004484|GO:0005524|GO:0006370
Tsu06g00352 1405 Pfam mRNA capping enzyme, catalytic domain 1077 1275 IPR001339 GO:0004484|GO:0005524|GO:0006370
Tsu06g00352 1405 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 909 978 IPR000387 GO:0016311|GO:0016791
Tsu06g00352 1405 Pfam Dual specificity phosphatase, catalytic domain 864 984 IPR000340 GO:0008138|GO:0016311
Tsu06g00352 1405 ProSiteProfiles RNase H type-1 domain profile. 548 677 IPR002156 GO:0003676|GO:0004523
Tsu06g00352 1405 Pfam mRNA capping enzyme, C-terminal domain 1280 1373 IPR013846 -
Tsu06g00352 1405 CDD RNA_5'-triphosphatase 815 981 - -
Tsu06g00352 1405 ProSiteProfiles ATP-dependent DNA ligase family profile. 1168 1331 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu06g00352 1405 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 1038 1276 - -
Tsu06g00352 1405 Pfam zinc-binding in reverse transcriptase 358 444 IPR026960 -
Tsu06g00352 1405 SUPERFAMILY Nucleic acid-binding proteins 1278 1390 IPR012340 -
Tsu06g00352 1405 MobiDBLite consensus disorder prediction 763 790 - -
Tsu06g00352 1405 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 725 1405 - -
Tsu06g00352 1405 SMART dsp_5 846 986 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00352 Tsu-Chr6 2908273 2923690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00352 723 1397 Protein tyrosine phosphatase (PTP) family AT3G09100 68.475 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00352 K13917 - gmx:100776633 1209.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00352 06 2908273 2923690 Tsu06g00352 06 2908273 2923690 ECH