Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00332 ATGAAGCAAGTGGTGGGAATGGTTGTTTCTAATAAGATGCAGAAATCGGTTGTTGTGGCAGTGGATAGATTATTCCATCACAAAATGTTCAACCGATATGTTAAGCGGACTTCAAAGTTTATGGCTCATGATGAGAACAATCTTTGTAACATCGGTGATCGAGTTCGATTGGATTCTTCTAGGCCTTTGAGCAAGCGTAAACATTGGGTGGACCTGCATCTACATCATGAATTGGCTCAAGGAGCAATTTTAATGTGGCATGTTCCAAGGCTGATTAGCTTGTTTGTTGATCGtttcacattttctctctcatctGATGGTCTAGCACTTCTCTCCCTGAAATCTGCCGTTGATCAATCCAATGACGGTGCTTTCTCCGATTGGAACGGCGGAGATTCTTATCCTTGCGGTTGGTCAGGAATCTCCTGTGCTAATATCTCTGGTGTACCGGAGCCACGTGTTGTTGGAATTGCACTAGCCGGAAAATCTCTCCGTGGTTATATTCCGTCGGAGCTCGGTACGCTTCGCTATCTTCGTCGTCTTAATCTTCATGATAATGATTTCTATGGTGTTGTTCCAGTTCAGCTGTTTAATGCTACTGCATTACATAGTATTTTTCTTCACCGGAATAATCTCTCCGGTCCGTTTCCGGCTTCCGTTTGTACTGTTCCACGTCTTCAGAATCTTGACCTCTCTGACAATTCATTCTCCGGTAGCATTCCTGATGATGTCAAGAAATGTAAGCAGATTCAAAGGCTTATTTTAGCAAGGAACAAATTATCCGGTGAGCTTCCGGCCGGTGTATGGTCGGAACTCGATAATCTCATCCAACTTGATCTCTCCGCCAATGATTTCAAAGGTCCAATCCCGGAAGATATGGGTGAACTTCATACCCTCTCCGGTACACTTAACCTCTCGTTCAACCACCTCTCCGGTAGGATTCCGAACTCACTCGGGAAATTGTTGGCCACCGTGAACTTTGATCTCCGAAACAACGACCTAATTGGCGAGATTCCCCAAACAGGAACATTTTCAAACCAGGGTCCAACTGCATTCCTCGGTAACAAAAACCTGTGCGGACTTCCACTTAGAAAATCCTGCACAGGTTCAGATCGAGGGTCAAGTTCTGGTTCGTCTTCTCGTGAAGGCGAACCACGTAACAGCTCGAAAGGGTTGAGCCCtggtttgattattttgatcTCAGCAGCCGATGTTGCTGGGGTCGCTCTTGTTGGACTTGTGATTGTGTATGTTTATTGGAAGAAAAAGGATGATGACAATGTGTGTAGTTGCATTGGGAAAAGAaggtttgatgatgataatgagaaTGGGAAAGAGAATGCTTGTACTTTGCTTCCATGTATGAATAATTTGAAGAATGAGGAAGACGGTGATGGGGGTGAAGTTGAGGTAGATGGAGGGGGGAAAGGGGAAGGTGAGTTGGTGACAATTGATAAGGGTTTTAGGATTGAGCTTGATGAGCTTTTGAAAGCCTCAGCATATGTATTAGGGAAGAGTGCATTGGGGATTGTATATAAGGTGGTGCTTGGAAATGGGATGCCAGTGGCTGTGAGGAGATTAGGGGAGGGTGGAGAAGAGAGGTATAAGGAGTTTGTGGCTGAGGTGCAAGCCATTGGGAAGGTGAAGCATCCTAATATTGTTAGGTTGAGAGCTTATTATTGGGCTCATGATGAAAAGCTTCTTATAAGTGATTTCATCTCCAATGGCAATTTGACCAATGCACTTCGAGGGAGAAATGGTCAACCATCTTCTAACCTTTCATGGTCAACAAGATTAAGAATTGCCAAAGGAATAGCAAGAGGCTTATCCTATCTTCATGAATTTAGTCCAAGGAAATTTGTCCATGGTGACATAAAACCCACAAACATCCTACTTGACAATGACTTACAACCCTACATTTCTGATTTCGGTCTTAACCGACTAATTAGCATCACAGGGAACAACCCTTCAACTGGTGGATTCATGGGTGGCGCTTTACCTTATTACGTGATGAAATCGTCacacaaagaaaacaaaacaaataataggTTGTCATTAGATAATGTTCGTGGTGGTAACAATTACAAAGCCCCCGAGGCTCGTGTACCTGGTTGTAGACCAACACAAAAATGGGATGTATATTCATTAGGTGTTGTTTTGCTTGAATTATTAACCGGGAAATCTACAGAATGTTCTCCCACATCCGCGTCATCATCAGCTTCTGTCGAAGTTTCCGATTTAGTAAGGTGGGTTAGAAACGGTTTTGATCAAGAAAGTCCATTATCTGAAATGGTTGATCCTTCATTGTTACAAGAAGTTCGTGCTAAGAAAGAGGTGTTGGCTGTGTTTCATGTTGCACTTGCTTGTACTGAAGGTGATCCTGAGGTTAGGCCTAGAATGAAAACTGTCTCCGAAAATCTTGAAAAAATCGGTAGGTAG 2439 0.4211 MKQVVGMVVSNKMQKSVVVAVDRLFHHKMFNRYVKRTSKFMAHDENNLCNIGDRVRLDSSRPLSKRKHWVDLHLHHELAQGAILMWHVPRLISLFVDRFTFSLSSDGLALLSLKSAVDQSNDGAFSDWNGGDSYPCGWSGISCANISGVPEPRVVGIALAGKSLRGYIPSELGTLRYLRRLNLHDNDFYGVVPVQLFNATALHSIFLHRNNLSGPFPASVCTVPRLQNLDLSDNSFSGSIPDDVKKCKQIQRLILARNKLSGELPAGVWSELDNLIQLDLSANDFKGPIPEDMGELHTLSGTLNLSFNHLSGRIPNSLGKLLATVNFDLRNNDLIGEIPQTGTFSNQGPTAFLGNKNLCGLPLRKSCTGSDRGSSSGSSSREGEPRNSSKGLSPGLIILISAADVAGVALVGLVIVYVYWKKKDDDNVCSCIGKRRFDDDNENGKENACTLLPCMNNLKNEEDGDGGEVEVDGGGKGEGELVTIDKGFRIELDELLKASAYVLGKSALGIVYKVVLGNGMPVAVRRLGEGGEERYKEFVAEVQAIGKVKHPNIVRLRAYYWAHDEKLLISDFISNGNLTNALRGRNGQPSSNLSWSTRLRIAKGIARGLSYLHEFSPRKFVHGDIKPTNILLDNDLQPYISDFGLNRLISITGNNPSTGGFMGGALPYYVMKSSHKENKTNNRLSLDNVRGGNNYKAPEARVPGCRPTQKWDVYSLGVVLLELLTGKSTECSPTSASSSASVEVSDLVRWVRNGFDQESPLSEMVDPSLLQEVRAKKEVLAVFHVALACTEGDPEVRPRMKTVSENLEKIGR 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00332 812 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tsu06g00332 812 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tsu06g00332 812 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tsu06g00332 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Tsu06g00332 812 Gene3D - 1 76 IPR012340 -
Tsu06g00332 812 Gene3D Phosphorylase Kinase; domain 1 486 572 - -
Tsu06g00332 812 MobiDBLite consensus disorder prediction 368 387 - -
Tsu06g00332 812 Pfam Protein kinase domain 502 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00332 812 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 101 811 - -
Tsu06g00332 812 Gene3D Ribonuclease Inhibitor 102 273 IPR032675 -
Tsu06g00332 812 Pfam Leucine rich repeat N-terminal domain 104 143 IPR013210 -
Tsu06g00332 812 ProSiteProfiles Protein kinase domain profile. 497 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00332 812 MobiDBLite consensus disorder prediction 367 391 - -
Tsu06g00332 812 TIGRFAM uS17_bact: ribosomal protein uS17 2 69 IPR019984 GO:0003735|GO:0005840|GO:0006412
Tsu06g00332 812 SUPERFAMILY Protein kinase-like (PK-like) 502 807 IPR011009 -
Tsu06g00332 812 SMART serkin_6 497 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00332 812 Pfam Ribosomal protein S17 6 70 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tsu06g00332 812 Gene3D Ribonuclease Inhibitor 274 365 IPR032675 -
Tsu06g00332 812 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Tsu06g00332 812 SUPERFAMILY Nucleic acid-binding proteins 2 73 IPR012340 -
Tsu06g00332 812 Pfam Leucine rich repeat 224 285 IPR001611 GO:0005515
Tsu06g00332 812 Gene3D Transferase(Phosphotransferase) domain 1 573 811 - -
Tsu06g00332 812 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 101 811 - -
Tsu06g00332 812 SUPERFAMILY L domain-like 104 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00332 Tsu-Chr6 2741102 2748786 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00332 100 810 Receptor kinase-like Gene Family AT1G67510 65.235 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu06g00332 Pkinase 6.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00332 - - var:108346287 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01447 04 14978412 14983498 Tsu06g00332 06 2741102 2748786 PCT